1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGTGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGgtgtacttcttttacattgaatcctttttcagttagatctttatctaaaggattatatgagattaaaagtgattgctttggtgcag
species | Arabidopsis thaliana |
transcript | AT2G18410.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAG AGTTGGTTGGAACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCGEST: gi|86053448|gb|DR349205.1|DR349205
genomic: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGgtgtacttct ... tttggtgcagAGTTGGTTGGAACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCG
EST: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAG AGTTGGTTGGAACTGGGAAGACACGEST: gi|19876059|gb|AU236890.1|AU236890
genomic: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGgtgtacttct ... tttggtgcagAGTTGGTTGGAACTGGGAAGACACG
EST: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAG AGTTGGTTGGAACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCG
genomic: TGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGgtgtacttct ... tttggtgcagAGTTGGTTGGAACTGGGAAGACACGTTTCTGCGTTGCCATTGATTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCAACTAGTTTTAGTGAAGGTTCAAGTTTGATTAAGTTACATAAGTGTGTGAGTGACTTGAAAAAGCTTTTTTCTTCAATCATTGAAGCAGGAAGAGgtgtacttcttttacattgaatcctttttcagttagatctttatctaaaggattatatgagattaaaagtgattgctttggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA