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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaagtaaaatcgagtatttggaattgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatag

Basic information

species Arabidopsis thaliana
transcript AT2G17840.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17840.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G36960.1 (Glycine max), 5'ss of exon 3
ATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaa-----gtaaaatcgagtatttggaat-tgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttggtttgatgaatatag
 ||| || ||||| ||||||||||||||||| |  ||||| |||||||| || || ||||| ||||| || || || ||||||| ||||     |  | ||  | ||| | || | | |||  ||| |  ||| ||   || |   | |  | | || |  || |    |||   |  |  |||   |
GTAAAGTGTGTGATGCTGTTGAAGTAGCTGGAAAAAATGTCATGTCAACATCATCAACTGTGACAACTGAGCTTGTCGATCACAGgtaaagcttgatatatgcattatctagagtgtaaaatacctagagattagggattgaa---tctgatgatagtataatatttgcttttcctaaactaatgatg

upper sequence: AT2G17840.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g03670.t01 (Vitis vinifera), 5'ss of exon 3
ATAAGGTCTGTGACGCTGTTGAAGTAGCTGGGAGGAATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaag--taaaatcgagtatttggaattgaaactcctggttatttggatatggaaagtgttttaagagaaggatgtaaattttgg-tttgatgaatatag---
 |||||||||||| || ||||||||||| || |||||||| |||||||| || |||||||| || || | ||| ||    || | |||    | | ||    | |||    || || |     |  |     | | | ||| |    ||  |    |       ||| ||      |  ||  |    
GTAAGGTCTGTGATGCGGTTGAAGTAGCCGGAAGGAATGTTATGTCAACATCATCCACTGTGACCACTGGACTTGTGTCACATAGgtagacttcacatgatattttttattttaaagcattcaggaa---aaagaagtaaaatacaatagaaatcagccaagtctttaggaccctctctattcaatgg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124808295|gb|EH894493.1|EH894493
EST:     ATGTAATGTCAACCTCTTCCACTGTTTACAACCGAACTCGTTGATCACAA                         A
genomic: ATGTAATGTCAACCTCTTCCACTGTT-ACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatag-
EST: gi|124808295|gb|EH894493.1|EH894493
EST:     ATGTAATGTCAACCTCTTCCACTGTTTACAACCGAACTCGTTGATCACAA                         A
genomic: ATGTAATGTCAACCTCTTCCACTGTT-ACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatag-
EST: gi|124811596|gb|EH896462.1|EH896462
EST:     AATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAA                         GTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGA
genomic: AATGTAATGTCAACCTCTTCCACTGTTACAACCGAACTCGTTGATCACAAgtaagtaaaa ... atgaatatagGTATGGTGGTAAAGCGGCTGAGGCGACAAACGAAGGGCTCGA