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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag

Basic information

species Arabidopsis thaliana
transcript AT2G17800.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G23340.1 (Glycine max), 5'ss of exon 2
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag---
|||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||  ||||||| || || |||||| ||||  || |     | ||  ||   | |   || |  | || | | |    | | | | |||| || | || ||      |    
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtact-actat-tatt-----ttttctttgtcaattttgggatgt-tgagttct----ttttagatttttattattttattacgtggaatag

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G05160.1 (Glycine max), 5'ss of exon 2
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag---
|||||||| || ||||||||||| || || ||||||||||||||||| |||||||||||||| ||||| ||  ||||||| || || |||| ||     ||        | || ||| ||     | |      || | | |    | | | | |||| || |  | || |    |    
GATTATGTGCCAACTGTTTTCGACAATTTCAGCGCAAATGTGGTTGTGAATGGAGCCACTGTTAATCTAGGATTATGGGACACTGCCGgtattgttgttat--------tttttctttgtccattctgggatgttgagttct----ttttagatttttattattctattatgtggaatag

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G36880.1 (Glycine max), 5'ss of exon 3
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag
|||||||| ||||||||||| || || || ||||||||||||||||| |||||   || ||||||||| ||  | |||||||| || |||| || ||   | ||     | ||  ||    |  |  | ||||  |   |||    |||| |  | |||| ||  |  ||  |||||
GATTATGTGCCGACTGTTTTTGACAATTTCAGCGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGgtaatg-ctgcgtgat-----tattgtttctgtgatgttggagcttggaagttttc--tctggatttattgtgttacttgtg-gaacag

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G08380.1 (Glycine max), 5'ss of exon 3
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag
|||||||| ||||||||||| || || || || |||||||||||||| |||||   || ||||||||| ||  | |||||||| || |||| || ||   | ||     |||      ||  |   || ||||  |   |||    |||| |  | |||| || ||  ||  |||||
GATTATGTGCCGACTGTTTTTGACAATTTCAGTGCAAATGTGGTTGTCAATGGGAGCATTGTGAATCTGGGTTTGTGGGATACTGCTGgtaatg-ctgcgtgattattgtctct----gtgatgttgg-agcttggaagttttc--tctggatttattgtgttatttgtg-gaacag

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g03860.t01 (Vitis vinifera), 5'ss of exon 3
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagt-agcggcagctatgggatttgg--ggtctgaaacttttgttttgttgttgt--aaacag
|||||||| || ||||||||||| || || || |||||||||||||| ||||| |||||||| || |||||| | |||||||| || ||||    |  | | |   |  || |  || ||  | |    |    |     ||||     | |    || |   |||||| |  |   |||||
GATTATGTGCCAACTGTTTTCGACAATTTCAGTGCAAATGTGGTTGTCAATGGGGCCACTGTTAACCTTGGGTTGTGGGATACTGCTGgtagcttcacagtcacttgtttccttttttgttttcaattactaacaaacattttgattattttatggctctgaatttgttctctttggaacag

upper sequence: AT2G17800.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S165_55V6.1 (Physcomitrella patens), 5'ss of exon 2
GATTATGTACCGACTGTTTTCGATAACTTTAGCGCAAATGTGGTTGTTAATGGAGCCACTGTGAATCTTGGGCTATGGGATACCGCAGgtactgactaaataatagggatcttacttagtagtagcggcagctatgggatttggggtctgaaacttttgttttgttgttgtaaacag-------------
||||| || || || ||||| |||||||| ||||| ||||| |||||  |||||  |||||| || ||||| ||||||||||| |||||||     ||| | |    | | ||  || |   |  || |||||     | | | | | || |      |       |  || | |               
GATTACGTTCCTACCGTTTTTGATAACTTCAGCGCGAATGTCGTTGTCGATGGAAACACTGTAAACCTTGGACTATGGGATACAGCAGgtaagagataacttaagttggtgttcttttggcatttcg-cagctg-attactagcgttttgtatggcaagggcatccgcagtgaccgaccaataattcaat