Sequence
atgc intronic sequence ATGC exonic sequenceGCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattctttactcgaagttgagagacagaacatttctcacatggaatgagtgacttatgaagagttttcccacttgcatttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G17640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G17640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G08930.1 (Glycine max), 5'ss of exon 3
GCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattctttact-------cgaagttgagagacagaacatttct-cacatggaatgagtgacttatg-----aagagttttcccacttgcatttcag----
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GCATTTAAAGATCGTGACCCTGCTTGTTTGTCGTATTGCTCCGCGCTTTTGTATATGAAGgtaagtctctgtttctcttccagttttcactccttatacattgctgcattcataatgcactatttctgtgactgagagttaattcac--gtagttaaacgtt
upper sequence: AT2G17640.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G22630.1 (Glycine max), 5'ss of exon 4
GCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattctttactcgaagttgagaga---cagaacatttctcacatggaatg----agtgacttatgaagagttttcccacttgcatttcag----------
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GCATTTAAAGATCGGGATCCTGCTTGTTTGTCATATTGCTCAGCACTTTTATATATGAAGgtaaatcttt--ttgtagttcatcaagtttcaagtattatgcacatgacttgctttagtatgtttttttaaatcctataatatgaatattaagtaaagggatMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86016773|gb|DR312519.1|DR312519EST: ATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAG GGTTATCATGCGTTACAAGCATATAGGGTTGCGCATAAACTGTGGAATGAA
genomic: ATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattcttt ... tgcatttcagGGTTATCATGCGTTACAAGCATATAGGGTTGCGCATAAACTGTGGAATGAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCATTTAAAGATCGTGATCCTGCTTGTCTGTCGTATAGTTCTGCTATTTTACATCTGAAGgtaattctttactcgaagttgagagacagaacatttctcacatggaatgagtgacttatgaagagttttcccacttgcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG