1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttcttgcttcttcttctttgtttttttctgtaggcttaaaaatgctataagagcatctacttagactaaagattgagatggattgtttttatgtaatgtgtag
species | Arabidopsis thaliana |
transcript | AT2G16430.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATT GGTGAAAACAGACCGTTTAAGCCGTTCACGCATAGGTACCGAACTCCTTACEST: gi|125164245|gb|EL190942.1|EL190942
genomic: ATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttc ... taatgtgtagGGTGAAAACAGACCGTTTAAGCCGTTCACGCATAGGTACCGAACTCCTTAC
EST: CTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATT GGTGAAAACAGACCGTTTAAGCCGTT
genomic: CTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttc ... taatgtgtagGGTGAAAACAGACCGTTTAAGCCGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATGGGACAGTTGGGGAAGATTTGCTGAAAGAAGCACAGCTTATCAGCCTTGGATTTGGACTACCGGAAACCATGAACTCGATTTTGCCCCGGAGATTgtaatgcttcttgcttcttcttctttgtttttttctgtaggcttaaaaatgctataagagcatctacttagactaaagattgagatggattgtttttatgtaatgtgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT