1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GAATTGATAGTAAAAAACTTGACAAGTGTATGGGAGACCCTGATGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatattagtcattttcatctgtattttcctccggcgtttcatagttataatctttgaataatccgttcgtttgtgattgacatattatattatgtag
species | Arabidopsis thaliana |
transcript | AT2G14740.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTGACTTGG-CAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGC-TACCTTGGTTGTCEST: gi|164179435|gb|ES183814.1|ES183814
genomic: CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC
EST: CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTAGCCTACCTTGGTTGTEST: gi|125279153|gb|EL293238.1|EL293238
genomic: CTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATT-GCCTACCTTGGTTGT
EST: TGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAA GTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC
genomic: TGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatatta ... tattatgtagGTTGGCAAGGGTTCAAGGGGTGATGTTACCATATTGCCTACCTTGGTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATTGATAGTAAAAAACTTGACAAGTGTATGGGAGACCCTGATGCTGACTTGGACAATCCAGTTCTTAAGGAAGAACAAGATGCTCAAgtaaatattagtcattttcatctgtattttcctccggcgtttcatagttataatctttgaataatccgttcgtttgtgattgacatattatattatgtag
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG