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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaatcatataaaatgaatacacttagtcctcttcgtaatcttgattcttactagtacattgactttggaaaacattatagctagagtttgattgttaatgatcatgtacatag

Basic information

species Arabidopsis thaliana
transcript AT2G13360.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G13360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G14740.1 (Glycine max), 5'ss of exon 3
TTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaa-tgaatcatataaaatgaatacacttagtcctcttcgtaatcttgattcttactagtacattgactttggaaaacattatagctagagtttgattgttaatgatcatgtacatag
| ||  | || || ||||| ||||||||||||||||| || ||||||||||||||||| ||  | || ||  | ||   |||||| || || || |||||||||    |    |      | || |  | ||||      | |||     ||    |  |  |  || | ||      || | ||||    | | |  ||   | |              
TACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTTGAAAATGTGATTGCAAGACACAGTCGTTTAGGCAAAGCAACCAGgtaaggcaagatttgcttgttcaaaaatcatagttaaggacttaac----atgtaaaagacgattttaatttctatgcac-tgatagtataaatctttttac-act--------------

upper sequence: AT2G13360.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G41460.1 (Glycine max), 5'ss of exon 4
TTCAACTTCTCTACGGTCTTAGAGCTGCTCTTGATCTTATCTTTGAGGAAGGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaatcatataa--aatgaatacacttagtcctcttcgtaatcttgattcttactagtacattgactttggaa-aacattatagctagagtttgattgttaatgatcatgtacatag
| ||  | || || ||||| ||||||||||||||||| || |||||||||||||| || ||  | |||||  | ||   |||||| || || || |||||||||  | || || |      | || |  | ||||      | |||  |  | |   |  |||  | |  || || |   | | ||||   | |  || | |                    
TACATTTGCTGTATGGTCTGAGAGCTGCTCTTGATCTGATTTTTGAGGAAGGACTCGAAAATGTGATCGCAAGGCACAGTCGTTTAGGCAAAGCAACCAGgtaag-gcatgatttgcttgttcaaaaatcatagttaaggacttaacatgtaatag-atgagtttaatttctatgcactgatagtataaaaaaaaattcact--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116484714|gb|EG527306.1|EG527306
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAA                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125097416|gb|EL153885.1|EL153885
EST:     TTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|124995810|gb|EL068079.1|EL068079
EST:     TCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCAT-GGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|124950685|gb|EL026128.1|EL026128
EST:     TTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: TTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125196079|gb|EL211033.1|EL211033
EST:     AGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: AGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125253954|gb|EL268039.1|EL268039
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGG
EST: gi|124753190|gb|EH843320.1|EH843320
EST:     ATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: ATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125202831|gb|EL217785.1|EL217785
EST:     CATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGG
genomic: CATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGG
EST: gi|124881598|gb|EH960500.1|EH960500
EST:     GGACTTGAGAATATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAA
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAA
EST: gi|124960836|gb|EL035473.1|EL035473
EST:     GTTTGGG-AAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: GTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|116473689|gb|EG516281.1|EG516281
EST:     CGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: CGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125017468|gb|EL089737.1|EL089737
EST:     CCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
genomic: CCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCTGAAAAACTGCACACAGAAGGAGGAATG
EST: gi|125319151|gb|EL333236.1|EL333236
EST:     GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGG
genomic: GGACTTGAGAACATCATCGCCCGCCATGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGG
EST: gi|125014891|gb|EL087160.1|EL087160
EST:     TGCTCGTTTGGGAAAGGCCACCAG                         GCTTGCGGTGGAAGCATGGGGGCTAGAAAAACTGCACACAGAAGGAGGAAT
genomic: TGCTCGTTTGGGAAAGGCCACCAGgtaaatgaat ... atgtacatagGCTTGCGGTGGAAGCATGGGGGCT-GAAAAACTGCACACAGAAGGAGGAAT