Sequence
atgc intronic sequence ATGC exonic sequenceGTTTTTGGTATGTAAGAATTGTAAAAAGACAAGGGAAGTTCCATGTCGTCCGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAGgtgagttcttttgattcgtttgtgatttgagtttgtagttatccttggtgttgattagaccaaattggaatttgtttag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G07690.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G11220.1 (Glycine max), 5'ss of exon 3
GTTTTTGGTATGTAAGAATTGTAAAAAGACAAGGGAAGTTCCATGTCGTCCGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAGgtg-agttcttttgattcgtttgtgatttgagtttgtagttatccttggtgttgattagacc--aaattggaatttgtttag---------------------
||| ||||||| |||||||| ||| | | ||||||||||| || || ||||| || ||||||||||||||||| |||||| || |||| ||||| |||||| | | ||||| | | | | ||| ||| || ||| | |||| || | | |
TACCTTGATATGTAAAAATTGTAAGAAGGGGAAACAGGTTCCATGTCGGCCAGGACTTGGGGGAGCAATTGTTCCTCGATCTTGTGATCATGTTCCTCAGgtttagttctgtcttatgttttgttttgcatgatacatgatatgctttactttttttattttttattttgggatgtctcttacgagataaaggatttttgtag
upper sequence: AT2G07690.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G22420.1 (Glycine max), 5'ss of exon 3
GTTTTTGGTATGTAAGAATTGTAAAAAGACAAGGGAAGTTCCATGTCGTCCGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAGgtgagttcttttgattcgtttgtgatttgagtttgtagttatccttggtgttgattagaccaaattggaatttgtttag---------------------
|| |||||||||||||||| || || | ||||| ||||| || || |||||||| ||||||||||||||||| |||||| || |||| ||||| | || || |||||| | | | ||| ||| || | | |||| || | | |
TACCCTGATATGTAAGAATTGTAAGAAAGGAAAACAGGTTCCGTGTCGGCCAGGACTTGGTGGAGCAATTGTTCCTCGATCCTGTGATCATGTTCCTCAGgtttagttcttgcttttgtttgttttgcatgacacatgatatgctttacttttttatttttattttgggatgtctcttacgaggtaaaggaattttgtagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|116420153|gb|EG462745.1|EG462745EST: CGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAG CCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGG
genomic: CGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAGgtgagttctt ... atttgtttagCCTGGAGAGGAGCCTTGCCCTCTTGATCCTTGGATGGTGGTTCCTGATAGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTTTTGGTATGTAAGAATTGTAAAAAGACAAGGGAAGTTCCATGTCGTCCGGGTCTTGGTGGGGCAATTGTTCCTCGATCATGTGATAATATTCCACAGgtgagttcttttgattcgtttgtgatttgagtttgtagttatccttggtgttgattagaccaaattggaatttgtttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG