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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAGTTATAGATGAGTCTGTGAGGGTTGGTTTCAAGTCTACAAAAGTTGCTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttggatatatcgttatgtacttgggaatgtgtggtttttttataactgttggtgtttttttag

Basic information

species Arabidopsis thaliana
transcript AT2G07180.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125129951|gb|EL173437.1|EL173437
EST:     CCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
genomic: CCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
EST: gi|125113842|gb|EL164513.1|EL164513
EST:     AAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
genomic: AAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
EST: gi|124857038|gb|EH941475.1|EH941475
EST:     CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACT
genomic: CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACT
EST: gi|124864035|gb|EH948472.1|EH948472
EST:     TTTCCAAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
genomic: TTTCCAAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
EST: gi|125011776|gb|EL084045.1|EL084045
EST:     CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAG
genomic: CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAG
EST: gi|124726834|gb|EH818236.1|EH818236
EST:     CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTG                         GCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT
genomic: CTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttgg ... gtttttttagGCTGAAGTCAACTATTTAGGACAGCTGAGTCACCCGAATTTGGTGAAACTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAGTTATAGATGAGTCTGTGAGGGTTGGTTTCAAGTCTACAAAAGTTGCTATCAAAGAACTTAATCCTGAGGGTTTCCAAGGAGATAGAGAGTGGCTGgtaatgttggatatatcgttatgtacttgggaatgtgtggtttttttataactgttggtgtttttttag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT