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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTTGATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataattctatccttcacacttacttacattacactttttcgtatattattatatagtgaaaagttgtcagaattaacatggtcctactagtgat...

Basic information

species Arabidopsis thaliana
transcript AT2G06850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G06850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA19G28220.1 (Glycine max), 5'ss of exon 3
CAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTTGATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataattctatccttcacacttacttacattacactttttcgtatattattatatagtgaaaa-----gttgtcagaattaacatggt-cctactagtgat-
||||||| |||||  ||||||| ||| ||||||||||||||||||||||  | || |  || ||||  ||||| || || |||||| |||| ||||| ||||| | | | |||      ||| |||  ||  ||| || ||||||| | | | |  || |  || |||     ||  |     | || ||  |   ||  | ||   
CAGGAGGCAAGGGTGACAGAGAGCAAAGAATCTATCTCTGGTTTGATCCCACAAAAGAATACCACAGATACTCCATTCTCTGGAACTTGTATCAGATTGTgtaagcacacttca----ctcaaact--ctcgcat-accctttttcatttttcaccatttgttggaaatcccagtcatatagctaaatattatgtatataattggag

upper sequence: AT2G06850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA16G26630.1 (Glycine max), 5'ss of exon 3
CAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTTGATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaata-attctatccttca--cacttacttaca-ttacactttttcgtat-attattatatagtgaaaagttgtcagaattaacatggtcctactagtgat
| || || |||||  ||||||||||| ||||||| ||||||||||| ||| | |  |  |||||||  |||||| | || ||||||||||||||||| ||||| | ||| |||   | |||||  ||   | | ||| || ||| ||  | |   |  |  || |  |   |  |   |  |  ||       | || ||     
CCGGTGGCAAGGGTGACAGAGAACAAAGAATCTACCTCTGGTTTGACCCTACAAGAGAATATCACAGATACTCAGTGCTATGGAACATGTACCAGATTGTgtaagtatatatttacttcttcactcaacaagtaacaatttcaccttccctttccaccaccatcttattccagttccaccaatctacagaaaccatatta-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124771241|gb|EH861371.1|EH861371
EST:     CCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125225829|gb|EL239914.1|EL239914
EST:     CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125028477|gb|EL100746.1|EL100746
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCG
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCG
EST: gi|125109912|gb|EL162130.1|EL162130
EST:     CCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124853176|gb|EH937613.1|EH937613
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGNTCGT                         ATTCTTTGTTGACAACATACCAATCC
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCC
EST: gi|125252027|gb|EL266112.1|EL266112
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTG
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTG
EST: gi|125109871|gb|EL162106.1|EL162106
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACG
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACG
EST: gi|125295624|gb|EL309709.1|EL309709
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAAC
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAAC
EST: gi|125233660|gb|EL247745.1|EL247745
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACA
EST: gi|124840384|gb|EH924823.1|EH924823
EST:     CTTATCACACTTACTCAANCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|164106685|gb|ES157257.1|ES157257
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACA
EST: gi|124735516|gb|EH826918.1|EH826918
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTG
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTG
EST: gi|124906123|gb|EH980203.1|EH980203
EST:     CTTATCAACACTTACTTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATC-ACACTTAC-TCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124880882|gb|EH959784.1|EH959784
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAA
EST: gi|125247991|gb|EL262076.1|EL262076
EST:     TACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
genomic: TACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTC-TTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
EST: gi|164005895|gb|ES010849.1|ES010849
EST:     GGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: GGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125014469|gb|EL086738.1|EL086738
EST:     CTAAGGCTTATTCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAA
genomic: CTAAGGCTTA-TCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAA
EST: gi|125020114|gb|EL092383.1|EL092383
EST:     ACTTACTCAATCC-TTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGACTC
genomic: ACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGA-TC
EST: gi|125209153|gb|EL224107.1|EL224107
EST:     TCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGT
genomic: TCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGT
EST: gi|124795533|gb|EH885212.1|EH885212
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAAT
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAAT
EST: gi|124813543|gb|EH898409.1|EH898409
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
EST: gi|125225129|gb|EL239214.1|EL239214
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAA
EST: gi|124743383|gb|EH834545.1|EH834545
EST:     CACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACG
genomic: CACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACG
EST: gi|125065340|gb|EL132605.1|EL132605
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAG
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAG
EST: gi|125237662|gb|EL251747.1|EL251747
EST:     TGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: TGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125008772|gb|EL081041.1|EL081041
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124854370|gb|EH938807.1|EH938807
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATA
EST: gi|124724971|gb|EH816373.1|EH816373
EST:     CTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAA
genomic: CTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAA
EST: gi|124862847|gb|EH947284.1|EH947284
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAA
EST: gi|125266588|gb|EL280673.1|EL280673
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACA
EST: gi|124814821|gb|EH899687.1|EH899687
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTT
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTT
EST: gi|124718184|gb|EH809586.1|EH809586
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGA
EST: gi|163992198|gb|ES006997.1|ES006997
EST:     TAAGGTCTTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTC
genomic: TAAGG-C-TTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTC
EST: gi|125064307|gb|EL131976.1|EL131976
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAA
EST: gi|124848089|gb|EH932526.1|EH932526
EST:     AACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: AACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125036998|gb|EL109267.1|EL109267
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAA
EST: gi|125015672|gb|EL087941.1|EL087941
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACTATACCAATCCGAACGTT
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAAC-ATACCAATCCGAACGTT
EST: gi|125036329|gb|EL108598.1|EL108598
EST:     CACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124933277|gb|EL010448.1|EL010448
EST:     TCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: TCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124888215|gb|EH967117.1|EH967117
EST:     TACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: TACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124750617|gb|EH840747.1|EH840747
EST:     CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125045226|gb|EL117495.1|EL117495
EST:     CCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125305278|gb|EL319363.1|EL319363
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACA
EST: gi|125288391|gb|EL302476.1|EL302476
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGNTCGT                         ATTCTTTGTTGACAACATACCAATCCGAAC
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAAC
EST: gi|124796424|gb|EH886103.1|EH886103
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTAGACAACATACCAATCCGAACGTTCAAGAAT
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTT-GACAACATACCAATCCGAACGTTCAAGAAT
EST: gi|125318001|gb|EL332086.1|EL332086
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGA
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGA
EST: gi|125324951|gb|EL339031.1|EL339031
EST:     TCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAAGAAATGCTAAGGAT
genomic: TCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAA-GAA-TGCTAAGGAT
EST: gi|125030779|gb|EL103048.1|EL103048
EST:     CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125042750|gb|EL115019.1|EL115019
EST:     CTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|125200406|gb|EL215360.1|EL215360
EST:     GCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: GCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|164026844|gb|ES104578.1|ES104578
EST:     TTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: TTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|164063921|gb|ES210734.1|ES210734
EST:     CTAAGGCTTATCACACTTACTCAATCCTTTGGTAACATGTACCAGATCGT                         ATTCTTTGTTGACAACA
genomic: CTAAGGCTTATCACACTTACTCAATCCTTTGG-AACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACA
EST: gi|125291453|gb|EL305538.1|EL305538
EST:     CACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATAGCTAAGGATC
genomic: CACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAAT-GCTAAGGATC
EST: gi|125238024|gb|EL252109.1|EL252109
EST:     CTTATCACACTTACTTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CTTATCACACTTAC-TCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124839502|gb|EH923941.1|EH923941
EST:     AACATGTACCAGATCGT                         ATTCTTTGTTGTACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
genomic: AACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTG-ACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATC
EST: gi|125161120|gb|EL188385.1|EL188385
EST:     CACTTACNCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124992517|gb|EL064786.1|EL064786
EST:     TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAAC
genomic: TCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAAC
EST: gi|125313208|gb|EL327293.1|EL327293
EST:     ATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: ATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124926195|gb|EL004078.1|EL004078
EST:     CACTTACTCAATCCTTTGGAACATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
genomic: CACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT
EST: gi|124994627|gb|EL066896.1|EL066896
EST:     ATGTACCAGATCGT                         ATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATTT
genomic: ATGTACCAGATCGTgtatgaataa ... ctttgatcagATTCTTTGTTGACAACATACCAATCCGAACGTTCAAGAATGCTAAGGATCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CAGGAGGAAAGGGAAACAGAGAACAACGAATCTATCTCTGGTTTGATCCTTCTAAGGCTTATCACACTTACTCAATCCTTTGGAACATGTACCAGATCGTgtatgaataattctatccttcacacttacttacattacactttttcgtatattattatatagtgaaaagttgtcagaattaacatggtcctactagtgat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tccttcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtgaaaa