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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTGAAACAGAACCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctactgagaacaatctttgttgattaaccgtttagttggctcggaaagtttgattctatgtactgttgttggctgatacag

Basic information

species Arabidopsis thaliana
transcript AT2G04630.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877353|gb|AU238184.1|AU238184
EST:     ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAG                         CATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGA
genomic: ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctact ... gctgatacagCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGA
EST: gi|164166323|gb|EL988489.1|EL988489
EST:     ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAG                         CATGAATGCTCCTGTTATGGTTGAGCTGGAGGGTGAGAC
genomic: ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctact ... gctgatacagCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGAC
EST: gi|86074796|gb|DR370553.1|DR370553
EST:     ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAG                         CATGAATGCTCCTGTTATGGTTGAGCTGGAGGGTGAGACTGATCCACTTGA
genomic: ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctact ... gctgatacagCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGA
EST: gi|116437351|gb|EG479943.1|EG479943
EST:     ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAG                         CATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGA
genomic: ACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctact ... gctgatacagCATGAATGCTCCTGTTATGGTTGAGTTGGAGGGTGAGACTGATCCACTTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGTTGAAACAGAACCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGTATCCTCGGCACTCGTGCTTTGCAGATTAGgtcagctactgagaacaatctttgttgattaaccgtttagttggctcggaaagtttgattctatgtactgttgttggctgatacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAGAT