Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGgtaatttcaacacctctgttgtttttgtttgtgttcatcaagattttgtgtgtttttgttgtgttcttcatcaagatactgtttgtttgttttgtttactatgttgttatatggcag

Basic information

species Arabidopsis thaliana
transcript AT2G03780.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT2G03780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os01g16100.1 (Oryza sativa), 5'ss of exon 3
AATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGgtaatttcaacacctctgttgtttttgtttgtgttcatcaagattttgtgtgtttttgttgtgttcttcatcaagatactgtttgtttgttttgtttact-atgttgttatatggcag
||||| ||  | |||||  | ||||| | |||||| ||| | ||||||||||||||||| |  |||||||||||||||||||||||| |  |        |       ||||| |  |   |   ||   |   ||  ||   |     |  |  ||  |   ||| |||||  || ||  ||  ||| ||       
AATGATAAAAGGGAAAGGCTTGTGAAAGCAAGTCGGGATTTGACAATGAACAGCAAAAAGGCCATCTTTCAGGTTCACAGgtaatttgacaa--------gcaaacaattgtgctagt---ggcattacattgcttcattaaataaaggaagagaattatccatgtatgtttccttgacagataatgtgat-------

upper sequence: AT2G03780.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G128080_T03 (Zea mays), 5'ss of exon 3
AATGAGAAGCGAGAAAGAGTGGTGAAGGTAAGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGgtaatttcaacacctctgt-tgtttttgtttgtgttcatcaagattttgtgtgtttttgttgtgttcttcatcaagatactgtttgtttgttttgtttactatgttgttatatggcag
||||| ||| |||||||  | ||||| |  ||||| ||||| ||||||||||||||||| || ||||||||||| |||||||||       |   || | |   | || |||  ||||     |||| |     || || ||    || ||| |   ||   ||||            || |    |  | ||     
AATGACAAGAGAGAAAGGCTTGTGAAAGCTAGTCGGGATATTACAATGAACAGCAAAAAGGTCATCTTTCAGGTCCACAGgtaagcagtgtagggctttgtacctctgcttgatttcac----atttagcaa--ttctgctg----ctgcattactttatattttgcaaa----aaggacgagaaagggacata----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19877137|gb|AU237968.1|AU237968
EST:     AGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAG                         GCTCAGTAAAGACAACAAAGAGGAGGTATTGGAGAAAGCAGGGAAGGATTT
genomic: AGTCGTGATATCACAATGAACAGCAAAAAAGTTATCTTTCAGGTTCACAGgtaatttcaa ... tatatggcagGCTCAGTAAAGACAACAAAGAGGAGGTATTGGAGAAAGCAGGGAAGGATTT