Sequence
atgc intronic sequence ATGC exonic sequenceATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGgttagatcatgaagttatatactttggtttgaaagtggttagtttacaattcttgttttctaactttcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G03530.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G03530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G12980.1 (Glycine max), 5'ss of exon 2
ATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGg--ttagatcatgaagttatatactttggtttgaaagtggttagtttacaattcttgttttc----taactttcag------------------------
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GTGGTCCTTAGTGTTGGAAATTTGTCAACACAATATGCTTGGGCTTTTGTTGGTTTATCAGTTGTAGAAGTGATCACATCAAGCATAACTGTTGTTATAGgtatcccaccatggatgctcctcttagattctggtgctatgtagtgtactctctttttttttgttatagaccatagagtataaattaagggtattctcca
upper sequence: AT2G03530.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g00530.t01 (Vitis vinifera), 5'ss of exon 2
ATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGgttagatcatgaagttatatactttggtttgaaagtggttagttta-caattcttgttttctaactttcag----------------------------------------------------------
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GTGGTCCTCAGCCTTGGAAACCTGTCCACACAGTATGCGTGGGCTTTTGTTGGTTTATCAGTTACAGAGGTCATCACCTCAAGTATTACTGTTGTTATAGgtcagtgtccatgggtgtgt----tggaagaactttagtttttttagctacattgcctttgtaaatcgtagtgtgacatgctactggaattttgtatattgccttaaccttttgttatgattgttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124901727|gb|EH975807.1|EH975807EST: TCACTGTAGTCATAG GCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCC
genomic: TCACTGTAGTCATAGgttagatcat ... taactttcagGCTCAACCTTGAACTATTTCTTGGATGATAAGATCAACAAAGCCGAGATCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATCGTGCTTAGCCTCGGGAATCTATCAACTCAATATGCATGGGCTTTAGTAGGCTTATCAGTTACAGAAGTCATCACATCAAGCATCACTGTAGTCATAGgttagatcatgaagttatatactttggtttgaaagtggttagtttacaattcttgttttctaactttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT