1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGCTTCTCTCACTTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtcttatctaaatcatgccttttgtttttttatttgtttatctgtggtcaagtcatgacacggttatgtgtgtttgcag
species | Arabidopsis thaliana |
transcript | AT2G03120.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAAEST: gi|116442939|gb|EG485531.1|EG485531
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAA
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050554|gb|DR346309.1|DR346309
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACAS-TTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050556|gb|DR346311.1|DR346311
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050548|gb|DR346303.1|DR346303
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050557|gb|DR346312.1|DR346312
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: ATGCTGTGCTAACMS-TTNACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050552|gb|DR346307.1|DR346307
genomic: ATGCTGTGCTAACAGCTT-ACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050550|gb|DR346305.1|DR346305
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAAC-MSTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050551|gb|DR346306.1|DR346306
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGAEST: gi|86050549|gb|DR346304.1|DR346304
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
EST: AATGCTGTGCTAACMS-TTACTTCTTTGTTCTTGGGATTGTCGCTCTTTC AGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
genomic: AATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtctta ... gtgtttgcagAGCGACATTGTTACCAGCCATCAGAAGATTTTTACCAAATCCTTGGAATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCTTCTCTCACTTTTCTTATTGTTCAAGTTTCTCTCAAAGGACTTGGTTAATGCTGTGCTAACAGCTTACTTCTTTGTTCTTGGGATTGTCGCTCTTTCgtatgtcttatctaaatcatgccttttgtttttttatttgtttatctgtggtcaagtcatgacacggttatgtgtgtttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG