Sequence
atgc intronic sequence ATGC exonic sequenceTGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgtaactttatacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttgaattctgatcttgcttattgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT2G02810.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT2G02810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA01G05170.1 (Glycine max), 5'ss of exon 3
TGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgta--acttt----atacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttg----aattctgatcttgcttattgcag
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TGGTGCTCCTTGGTGGAGTTATTGGAGCGCTGGAATTACCAACACCATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatgatttcttcaacactttctttttctgcctccttttcttcttaaaaaaaaattgaattgcatttaattaatctggtatggaagctgtgattttacct-------
upper sequence: AT2G02810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA02G02330.1 (Glycine max), 5'ss of exon 3
TGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgtaac-tttatacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttgaattctgatctt--gcttattgcag
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TGGTGCTCCTTGGTGGAGTTATTGGAGCGCTGGAATTACCAACACCATTGGTCCTGCTATGGGAATTGAAGCTTTGAAGTATATTAGTTACCCTGCTCAGgtatcatttcttcaacactctttttctgtctcctttttttttaaaaaaaaagtttataatctggtatggaagttgtgattttacctgaagtgtgttgttt
upper sequence: AT2G02810.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0026g01890.t01 (Vitis vinifera), 5'ss of exon 3
TGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgta-------actttatacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttgaattctgatcttgct-tattgcag
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AGGTGCTCCTTGGTGGAGTTACTGGAGTGCTGGCATTACAAATACAATTGGTCCAACCATGGGGATAGAAGCTCTAAAGTATATAAGTTACCCAGCACAGgcatgttactacttactacctttgtttttgacaagctctcctcatatttctgtaccagcttcttaccacattagtttgcccaaatgtcatctcaaagtat-----Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86041456|gb|DR337211.1|DR337211EST: GTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAG GTTTTGGCAAAATCGTCAAAAATGATTCCAG
genomic: GTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgtaactttat ... cttattgcagGTTTTGGCAAAATCGTCAAAAATGATTCCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGGAGCACCATGGTGGACGTATTGGAGTGCAGGCATTACTAATACAATTGGTCCTGCCATGGGAATTGAAGCCTTGAAGTATATCAGTTATCCAGCTCAGgtaactttatacctcatcagtagtaatactcagattatggtttatgaactgtttcttaggtaaatgatgggttgaattctgatcttgcttattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA