1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttatactgttgttgtttgtcttataagcatttctaaagccagtgtctatgttgttgttcttatctgttgttctttttaatattgcag
species | Arabidopsis thaliana |
transcript | AT2G01250.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|124765001|gb|EH855131.1|EH855131
genomic: CTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: AAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|125083832|gb|EL144257.1|EL144257
genomic: AAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGEST: gi|164108926|gb|ES050871.1|ES050871
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAG
EST: CTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|164160269|gb|ES170123.1|ES170123
genomic: CTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: AGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|125080290|gb|EL141947.1|EL141947
genomic: AGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAAGAAGATTCTCCAGCTCTTGCGTTEST: gi|124949705|gb|EL025259.1|EL025259
genomic: TAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAA-GAAGATTCTCCAGCTCTTGCGTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTEST: gi|124724499|gb|EH815901.1|EH815901
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCT
EST: TAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|124775246|gb|EH865375.1|EH865375
genomic: TAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTEST: gi|164211690|gb|EL988985.1|EL988985
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGEST: gi|125325666|gb|EL339746.1|EL339746
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAG
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGEST: gi|152034121|gb|BP868106.2|BP868106
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTG
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|163985597|gb|EL967501.1|EL967501
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: CTTG-TCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|152038370|gb|BP815237.2|BP815237
genomic: CTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|124915675|gb|EH989549.1|EH989549
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGEST: gi|125144823|gb|EL180253.1|EL180253
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAG
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTEST: gi|164200246|gb|EL968786.1|EL968786
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCT
EST: TTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|124964073|gb|EL038365.1|EL038365
genomic: TTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGAEST: gi|164011254|gb|ES208951.1|ES208951
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGA
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGAACTAAGAAGATTCTCCAGEST: gi|164049079|gb|ES080861.1|ES080861
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGA-CTAAGAAGATTCTCCAG
EST: GCTCTTGTTCATCGTCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|124760594|gb|EH850724.1|EH850724
genomic: GCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCAEST: gi|163978199|gb|ES156398.1|ES156398
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCA
EST: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAAGACTAAGAAGATTCTCCAGEST: gi|124705769|gb|EH797171.1|EH797171
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAA-GACTAAGAAGATTCTCCAG
EST: TCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTTEST: gi|125274717|gb|EL288802.1|EL288802
genomic: TCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
EST: TTCTATGTTGACCCTGAAGC-AAGCTCTTGTTCATCATCCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGEST: gi|125276746|gb|EL290831.1|EL290831
genomic: TTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAG
EST: CCGTATCCGTGG TATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
genomic: CCGTATCCGTGGgtatgttata ... aatattgcagTATCAATGCCATTGACCCTAAGACTAAGAAGATTCTCCAGCTCTTGCGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAAGGAGTTGATCTCGTTGAAACGCGAGGCCAAGCTTAAGGGAGGTTTCTATGTTGACCCTGAAGCTAAGCTCTTGTTCATCATCCGTATCCGTGGgtatgttatactgttgttgtttgtcttataagcatttctaaagccagtgtctatgttgttgttcttatctgttgttctttttaatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC