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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcacttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag

Basic information

species Arabidopsis thaliana
transcript AT1G80910.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G34400.1 (Glycine max), 5'ss of exon 2
ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcacttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag
| | ||||| || ||||| || || || || || |||||||| |||||||| ||||||||||| |||||||| |||||||||||||| |||||||| |    |   |   |||      | | ||  || |       |||  || |   |    |  |   |    |  |   |||      | ||||
AATCTTCTCGCCAGAGGCTGCCTGCGACGTCATCGAAGCAGAAAGACATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATGgttccttctc-ccgtttctcctctctttcttttcattctcaaatcacaatgcttggaattgtgtattcatttgatatgagtttgtttccttgtag

upper sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G05260.1 (Glycine max), 5'ss of exon 2
ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcacttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag
| | ||||| || ||  | ||||| ||||| || ||||| || || ||||| ||||||||||| |||||||| |||||||||||||| ||||| || |       ||  |  |||| | | ||||     |   | | || | |||  |  ||  ||   | |    |                     
AATCTTCTCTCCAGACTCTGCTTGCGAGGTCATCGAAGCTGAAAGGCATTCTCATGTTTTCTACGAGGCCGAACCCGATATCTGGATAGTCATTgttcgttcacttcttccatttctcctctttttcttttcattctccaatatgtgtaattgtgtatccatattttag--------------------

upper sequence: AT1G80910.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0011g06030.t01 (Vitis vinifera), 5'ss of exon 2
ACTTTTCTCCCCGGAGGCAGCTTGTGAGGTAATTGAAGCAGAGAGACATTCCCATGTTTTCTATGAGGCCGAGCCCGATATCTGGATGGTCATGgtacaacattatcaactctttcac--ttgttttagcaattgatttgcactttgttcatatgcataaaaagaacaaaatttgatttagactttggtag-------
| | || || || ||||| ||||||||||| || ||||||||||| ||||| ||||||||  || |||| ||||| ||||| |||||||||||||| |    ||||| | |  || ||     | | |   ||    |   |  ||| |  | || ||  | |       || | | | |   | |  |         
AATCTTTTCTCCAGAGGCTGCTTGTGAGGTTATAGAAGCAGAGAGGCATTCTCATGTTTTTCATCAGGCTGAGCCAGATATTTGGATGGTCATGgtgcg---ttatctatttcttaacaacaatctcactgatgagctccgatattggttgtttg-atgtataatttgtcatatcactgatggtctattctatatgtt