1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTTACTCCATCACCGGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttcttttaattccttggctcctttgtttttccatggcttaaaatctaatttgtttgtcctaataactcttgtatatatattgtaacatgtgagtttgcttcttctattgcag
species | Arabidopsis thaliana |
transcript | AT1G80670.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCEST: gi|116458585|gb|EG501177.1|EG501177
genomic: -TTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCC
EST: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCTEST: gi|116458586|gb|EG501178.1|EG501178
genomic: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
EST: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAG GTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
genomic: GTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttctttt ... tctattgcagGTGAGGTGTTGGGAAATATCCCGTAGTGGAGCCTCTCTAGCCAGTGCTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTACTCCATCACCGGCAGATTCTATTTCGAGCTTAAGTTTTAGTCCAAGAGCTGATATACTTGTGGCCACTTCATGGGACAATCAGgttttcttttaattccttggctcctttgtttttccatggcttaaaatctaatttgtttgtcctaataactcttgtatatatattgtaacatgtgagtttgcttcttctattgcag
- - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT