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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaattgaaaaggatagactatattgtatatgataagcaaacctctctcgactcttgtctgagtgttatgttttctgatctatag

Basic information

species Arabidopsis thaliana
transcript AT1G80230.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86037667|gb|DR333422.1|DR333422
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAG
EST: gi|86037662|gb|DR333417.1|DR333417
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037651|gb|DR333406.1|DR333406
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037663|gb|DR333418.1|DR333418
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037669|gb|DR333424.1|DR333424
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037675|gb|DR333430.1|DR333430
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037647|gb|DR333402.1|DR333402
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037644|gb|DR333399.1|DR333399
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCSTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: gi|86037659|gb|DR333414.1|DR333414
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037674|gb|DR333429.1|DR333429
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037656|gb|DR333411.1|DR333411
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037665|gb|DR333420.1|DR333420
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037646|gb|DR333401.1|DR333401
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037648|gb|DR333403.1|DR333403
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037661|gb|DR333416.1|DR333416
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037654|gb|DR333409.1|DR333409
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037660|gb|DR333415.1|DR333415
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037664|gb|DR333419.1|DR333419
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037670|gb|DR333425.1|DR333425
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037672|gb|DR333427.1|DR333427
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037655|gb|DR333410.1|DR333410
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|86037657|gb|DR333412.1|DR333412
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAA-G                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGT
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGT
EST: gi|86037645|gb|DR333400.1|DR333400
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTAAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTGC
EST: gi|164089899|gb|ES029767.1|ES029767
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: gi|86037671|gb|DR333426.1|DR333426
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAA
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAA
EST: gi|86037666|gb|DR333421.1|DR333421
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTG
EST: gi|125140196|gb|EL178566.1|EL178566
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTT
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTT
EST: gi|86037676|gb|DR333431.1|DR333431
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTT-G
EST: gi|125119219|gb|EL167549.1|EL167549
EST:     GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAG                         GAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTG
genomic: GGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaa ... tgatctatagGAAGCTCCTGCTGTAGTCAAATCCTACTACGACATGAGAATAGTTGGTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGGAGGAAGCTGGACGATATAGACTTTCCTGAAGGGCCTTTTGGAACAAAGgtttgtgtaattgaaaaggatagactatattgtatatgataagcaaacctctctcgactcttgtctgagtgttatgttttctgatctatag

 GGAGGA
- - - AAGCTG
- - - - GCTGGA
- - - - - - - - - - - - - - CTGAAG