Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCTCTAACGTTTTATCGTTCTGGAACATTCTCTGTTGATGTGCAGTACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctttctcccaatgtcatgactatgtataactgtagtgctcttgtttctaatggttgatctcctttttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G79930.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86087898|gb|DR383657.1|DR383657
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
EST: gi|164142254|gb|ES076546.1|ES076546
EST:     CACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGTGAGAGGGCAAAGCTTAAAGTGAAA
genomic: CACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
EST: gi|86087379|gb|DR383138.1|DR383138
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
EST: gi|47829158|gb|CK118842.1|CK118842
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
EST: gi|86087897|gb|DR383656.1|DR383656
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
EST: gi|86087380|gb|DR383139.1|DR383139
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACG                         ATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCAAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCGTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTTAAAGTGAAA