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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGCTCTAACATTTTATCGTTCTGGAACATTCTCTATTGATGTGCAGTACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctttgcccaatgtcaagactatgtatgactgtagtgctcttgtttctaatggtggatctcctttttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G79920.2
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47828737|gb|CK118421.1|CK118421
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG                         ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: gi|164075212|gb|ES124982.1|ES124982
EST:     GCACATACACG                         ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
genomic: GCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: gi|47830571|gb|CK120255.1|CK120255
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG                         ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
EST: gi|125065118|gb|EL132466.1|EL132466
EST:     ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG                         ATTGGTCCCTTCCA
genomic: ACAGTGATGTGAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCA
EST: gi|125022213|gb|EL094482.1|EL094482
EST:     GAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACG                         ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA
genomic: GAACGATTTGCAAGCACCTCCTAAAATCAGCACATACACGgtttgatctt ... ctttttgtagATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAA