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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGgtacaacatatcacaattaatgtttaactctcgaaatctctaatcataatgcttaaagtggatttatcattaatgtgtaatttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G79580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G79580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G17140.1 (Glycine max), 5'ss of exon 3
TAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGgt------acaacatat-----cacaattaatgtttaactctcgaaatctctaatcataatgcttaaagtggatttatcattaatgtgtaatttgcag---
 || || || || |||||||||||||||||||||||||||||||| || || ||||||||||| || |||||| | || ||    ||    || ||||| ||      || | | ||      ||| ||||  | ||  | |  |      | ||| | |   | |  |   |||| | || ||||   ||     |    
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAAAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATATTCAAgtgagaaaactatacatacacatacacttaaactatatatgttcattctcttgatctttagattaagggcacattt-tgatgaatgaaaaaaacttactta

upper sequence: AT1G79580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G42050.1 (Glycine max), 5'ss of exon 4
TAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGgt------acaacatatcacaattaatgtttaactctcgaaatctctaatcataatgcttaaagt--ggatttatcattaatgtgtaatttgcag------
 || || || || ||||||||||||||||||||||||||||| || || || ||||||||||| || |||||| | || ||    ||    ||  |||| ||      || ||| || |||  ||   || || | | ||  ||  |  || | ||  ||| | |  ||    ||  || |     | ||| |        
GAAAACCCTAGTTTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGATTGGATCATGCATGAGTATCGCCTTGATGAAGATGATGCTGATGTTCAAgtgagaaaaccacacat-acacatacacttcaattatagatgtccattctcttgatctttagattaagggcacatttttgacaaaaattttacttgagtat

upper sequence: AT1G79580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv19s0085g01210.t01 (Vitis vinifera), 5'ss of exon 2
TAAGACTCTTGTCTTCTACACTGGTCGTGCTCCTCATGGCCAAAAAACCGAATGGATCATGCACGAATATCGCTTGGACGATAGCGAAAACGAAATTCAGgt--acaacata----tcacaattaatgtttaactctcgaaatctctaatcataatgcttaaagtggatttatcattaatgtgtaatttgcag---------
 || || || |||||||||||||| ||||||||||| |||||||| || || ||||| ||||| || |||||| |||| |||  | |   |||  |||||||  ||||  ||    |||  | | | | |||| | | |  || | || |     |   | || |  |   |  |||||     ||    ||          
AAAAACCCTAGTCTTCTACACTGGGCGTGCTCCTCACGGCCAAAAGACTGACTGGATTATGCATGAGTATCGCCTGGATGATGACAATGCCGATGTTCAGgtgaacaatttaattttcagcagtgaggattaa-tttagttat-tttacttgagttctatgaaattaaaaaaaaattaaaaaaaaaaaaacaaaaaaaaaac