1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGTAACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGgtaccagtttgtgtagagagtgagacttgttccgttatgttattagtcatattactgaaactcttgattatctttcag
species | Arabidopsis thaliana |
transcript | AT1G78150.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAG CAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTAEST: gi|124905706|gb|EH979786.1|EH979786
genomic: ACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGgtaccagttt ... tatctttcagCAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTA
EST: CGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAG CAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTAEST: gi|125053763|gb|EL124745.1|EL124745
genomic: CGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGgtaccagttt ... tatctttcagCAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTA
EST: CGTAACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAG CAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTA
genomic: CGTAACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGgtaccagttt ... tatctttcagCAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGTAACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGgtaccagtttgtgtagagagtgagacttgttccgttatgttattagtcatattactgaaactcttgattatctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG