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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGgttggtgaaatgtcttcttctctcaatttgttattagtttctagtttcctcttaacaatctgatttcttatgattaatgtggcattgccactactaagtaccaaattctttatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G77440.2
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G77440.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g02260.t01 (Vitis vinifera), 5'ss of exon 3
GACTCGTATTTCGTCATAAGTTATATCAGCTTAGGGAAGAAAGAGACATGAAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGgttggtgaaatgtcttcttctctcaatttgttattagtttctagtttcctcttaacaatctgatttcttatgattaatgtggcattgccactactaagtaccaaattctttatttcag
| || || ||||| || ||  | ||||||||| | || || || || |||||||| ||||| || || || |||||||| ||| |||||||||||||||||||      |     |  |  || || || || ||  |      |||  |||      | ||   | ||   ||  |  |   ||   ||  | |   | |    || | | |||   
GGCTTGTTTTTCGGCACAAACTGTATCAGCTTCGAGAGGAGAGGGATATGAAGCCCGAAACCTTTGCAAGCCTTGTATCTGCTCTTCTTTATGAGAAAAGgtt------actcgcttattactgaagtttttgtttatcatattttttttct-----gtttggaattttgaaatggacttattatg--caacatt---tgctggtttttctttttg--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86076869|gb|DR372626.1|DR372626
EST:     AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAG                         ATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAA
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGgttggtgaaa ... tttatttcagATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAA
EST: gi|124708666|gb|EH800068.1|EH800068
EST:     AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAG                         ATTTGGCCCATCCTTGTGCCAA
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGgttggtgaaa ... tttatttcagATTTGGCCCATTCTTGTGCCAA
EST: gi|116388094|gb|EG430686.1|EG430686
EST:     AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAG                         ATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAA
genomic: AAGCCTGAAACTTTCGCTAGTCTTGTATCGGCTATTCTTTATGAGAAAAGgttggtgaaa ... tttatttcagATTTGGCCCATTCTTGTGCCAACCTGTGATTGCTGGATTGGGAGATGATAA