Sequence
atgc intronic sequence ATGC exonic sequenceGCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgttaatttctggctttttgcttctcctctaatgttatttgagctttagcatagtaagtgactacagcattttgtttctatgaattacacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G77260.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA14G24900.1 (Glycine max), 5'ss of exon 3
GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgttaatttctggctttttgcttctcctctaatgttatttgagctttagcatagtaagtga-ctacagcattttgtttctatg---aattacacag----------
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GCCATGGTAGCGGTATTTGCTACACACCGGTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgt-agttcct--ctctctgtttaaacctt--tcatctctcatttttcatctcctagcttttctttagttttttttttatatgtgaaaacatgtagtgccttcact
upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G09520.1 (Glycine max), 5'ss of exon 3
GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgttaatt-tctggctttttg-----cttctcctctaatgttatttgagctttagcatagtaagtgact---acagcattttgtttct-atgaattacacag
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GCCATGGTAGCGGTATTTGCTACGCACCGTTTGTTGTTCCCAAGCCAGGCATTTGACCTGATCCATTGTTCAAGATGCAGAATTAATTGGACTCGTGATGgtagttcctctctctgtttaaacctttcatctcctagcttttctatagtttttttttttaaagtttgtgtgaaaacatgtagtgccttgtgactaaaaca-
upper sequence: AT1G77260.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g01600.t01 (Vitis vinifera), 5'ss of exon 3
GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgt-taatttctggctttttgcttctcctctaat----gttatttgagctttagcatagtaagtgactacagcattttgtttctatgaattacacag------
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GCCATGGTAGCAGTATTTGCGACACACCGGTTGTTATATCCAAGCCAGGCTTTTGACTTGATACATTGCTCAAGATGTAGAATTAATTGGACCCGTGATGgtatgcccccttctcctttgtatttctattaagaaaagctttttccatttaaactgggttaagaa--atgactattggtaaatcttgagcacaaagatgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164002075|gb|ES214803.1|ES214803EST: CAGATGCAGAATTAATTGGACACGCGATG ATGGGATACTTCTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACT
genomic: CAGATGCAGAATTAATTGGACACGCGATGgttaatttct ... aattacacagATGGGATACTTCTTCTTGAAGTTAATAGAATGCTTAGAGCAGGAGGCTACT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCGATGGTGGCTGTCTTTGCCACACGGAGGTTGTTGTATCCAAGCCAGTCTTTTGAGATGATTCATTGTTCCAGATGCAGAATTAATTGGACACGCGATGgttaatttctggctttttgcttctcctctaatgttatttgagctttagcatagtaagtgactacagcattttgtttctatgaattacacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG