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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGCGATTGGCCTTGATGAGAAAATCAAAGTGGATCTCATTGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGAAAGGAGAGgtgagatttgttacaattcattttaactttaaaagatattagttgaaccaaaccatatgattggagtttgatatgactatgtgtgcag

Basic information

species Arabidopsis thaliana
transcript AT1G76730.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164124709|gb|ES144404.1|ES144404
EST:     TTAGGGAAAGGAGAG                         GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
genomic: TTAGGGAAAGGAGAGgtgagatttg ... atgtgtgcagGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
EST: gi|164174179|gb|ES179786.1|ES179786
EST:     GGAAAGGAGAG                         GG-TTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
genomic: GGAAAGGAGAGgtgagatttg ... atgtgtgcagGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
EST: gi|86079362|gb|DR375119.1|DR375119
EST:     GCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGAAAGGAGAG                         GGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
genomic: GCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGAAAGGAGAGgtgagatttg ... atgtgtgcagGGTTTTGCGGAACTCGAATATGGAATGTTGCGTTACATGGGAGCCATTGAT
EST: gi|164127704|gb|ES149334.1|ES149334
EST:     CTCGATTAGGGAAAGGAGAG                         GGTTTTGCGGAACTCGAATATGGAATGGTTGCGTTACATGGGAGCCATTGA
genomic: CTCGATTAGGGAAAGGAGAGgtgagatttg ... atgtgtgcagGGTTTTGCGGAACTCGAATATGGAAT-GTTGCGTTACATGGGAGCCATTGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAGAGCGATTGGCCTTGATGAGAAAATCAAAGTGGATCTCATTGTCATTGGCTCTGTTGCGGTTAACCCACAAACGGGTGCTCGATTAGGGAAAGGAGAGgtgagatttgttacaattcattttaactttaaaagatattagttgaaccaaaccatatgattggagtttgatatgactatgtgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA