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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCAGCTGGAGATTTTCTTTAAGGATGAGAGTAGGCATGGATTACCTGTTGTTGATTTGTATGAACTTGTTCAACATGCCGGCAACATATTGCCCAGAATgtaagctgattcatcattgagctagtttctattcctcttgatctgataaagatctaatactctcaatcctctagctatatagcctagattagactagaaaatggcaatctcctcctatattaatgtttctcttgggctgcattgatttaccag

Basic information

species Arabidopsis thaliana
transcript AT1G75850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g58700.1 (Oryza sativa), 5'ss of exon 3
GGCAGCTGGAGATTTTCTTTAAGGATGAGAGTAGGCATGG--ATTAC-CTGTTGTTGATTTGTATGAACTTGTTCAACATGCCGGCAACATATTGCCCAGAATgtaag-ctgattcatcattgagctagtttctattcctcttgatctgataaagatctaatactctcaatcctctagctatatagcctagattagactagaaaatggcaatctcctcctatattaatgtttctcttgggctgcattgatttaccag
   |||||||||| ||||| | ||| ||||   | | |||    | | | ||||||||||||||||| ||||| || ||||| |||||| || |||||||| |||||| || || || |  |   |  |  |  |   || || |  |  |  |  | |  | || | |   ||   | | ||    ||   | ||  |     |                                                    
---AGCTGGAGATGTTCTTCAGGGAGGAGACCCGTCGTGGCAGCTGCTCCGTTGTTGATTTGTATGAGCTTGTGCAGCATGCTGGCAACGTACTGCCCAGACTgtaagactaatgcaccccttgtcaggcataaacagctgttaactttgtgtaattatg-tgctgttagctct---gttttacttgctctgtgaggtttctggagc--------------------------------------------------

upper sequence: AT1G75850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv18s0001g14680.t01 (Vitis vinifera), 5'ss of exon 3
GGCAGCTGGAGATTTTCTTTAAGGATGAGAGTAGGCATGGATTACCTGTTGTTGATTTGTATGAACTTGTTCAACATGCCGGCAACATATTGCCCAGAATgtaagctgattcatcattgagctagtttctattcctcttgatctgataaagatctaatactctcaatcctctagctatatagcctagattagactagaaaatggcaatctcctcctatattaatgtttctcttgggctgcattgatttaccag
|| |||||||||| ||||||||||| || || |||||||| |   || |  ||||| ||||||| || ||||| |||||||| ||||||||||| ||| |||||| |   | |  | |||   | ||  |  |||  | |            |||  | ||  ||||        ||| |       | || | | |   |   | |||   | | |                                    
GGAAGCTGGAGATATTCTTTAAGGACGAAAGCAGGCATGGTTGTTCTATCATTGATCTGTATGAGCTAGTTCAGCATGCCGGAAACATATTGCCTAGACTgtaagtt---tgaagactgaatcaattaattctccaatcgt----------gtcttcttcttccaattgctactttatgtgtt----actaaattggtgcaaatccatcaagttcaa------------------------------------