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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaattcctgggaaccacttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag

Basic information

species Arabidopsis thaliana
transcript AT1G73980.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os02g47860.2 (Oryza sativa), 5'ss of exon 3
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgc------atttactactatttcaaacttgtggacagacggcgttatacttgaattcctgggaaccacttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag
|||| || |||||  | || ||||| |||||||| | ||| |||| | | |||||||||||||||||||| ||||||  ||| |  || |  || ||||||||  | | | |||   |  |         |||   ||| ||| |   ||||  | | | ||   |||   |  ||        | |  || ||| | |  || ||                                             
ACTACGACACACTGTTGGAAAATATTCATGGTCTGAAGGAGGGAAGATCAGTTCAGGTTCCAATATATGATTTCAAGATGAGCTGCCGGACTGGATACAGgta-gtttgtccttaaataataattcccagtttgtcact-ttttagtattgtaaatatatggtcatatgtctttatgtt-----atcttttctta-tggcaaacag---------------------------------------------

upper sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G147430_T02 (Zea mays), 5'ss of exon 3
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaattcctgggaaccacttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag
||||||| ||||| || || |||||||||||||| | ||| ||||   | |||||||||||||||||||| |||||||| || |  || |  ||||| ||||| ||       ||  || |   |||   | |||| ||| |||  |     | | |  |||      |||| |  |||    |  | | ||  || | || | ||||                                     
ACTATGACACACTGCTGGAAAATATACATGGTCTGAAGGAAGGAAGGTCAGTTCAGGTTCCAATATATGATTTCAAGTCAAGCTGCCGGACTGGTTATAGgtaaat-----tatcactgctatcttt--caatattacaagcttaagccttaaggtccatattgcatcattcatttgaata--tcataatttcttatgtgcaa-acag-------------------------------------

upper sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G07610.1 (Glycine max), 5'ss of exon 4
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaatt-cctgggaaccacttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag
| |||||||| || || || |||||||| ||||| |  |  || || |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||| | | ||   ||      |  |||| ||  | |||  ||  ||     || |    || ||  ||     ||| ||    |  |   |  | |    | ||    |                                      
ATTATGATACCCTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgt-tgtgtaccttt------ttaattttctcatttttagaatatgcatg-agtccattttgtagctgtgccacctaggtttaatctcacaaattagggaaacttggaa--------------------------------------

upper sequence: AT1G73980.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G09080.1 (Glycine max), 5'ss of exon 3
ACTATGATACACTTCTTGACAATATACATGGTCTAAGGGATGGAAAACCTGTTCAGGTTCCAATATATGACTTCAAGTCGAGTTCTCGAATAGGTTACAGgtatatatattcttcgttggtgcatttactactatttcaaacttgtggacagacggcgttatacttgaattcctgggaacca--cttgttagttgataagagctacacagctgcaatgacttatcagtttcttcgtgctttgtatag
| ||||||||  | || || |||||||| ||||| |  |  || || |||||||| ||||||||||| || |||||||| |||||||| ||||||||||||| | | ||   ||      |  |||| ||  | |||  ||  ||     ||      || ||  ||         |    |  ||    | ||    | | ||  |                                        
ATTATGATACCTTGCTCGAAAATATACAGGGTCTTAAAGCAGGGAAGCCTGTTCAAGTTCCAATATACGATTTCAAGTCTAGTTCTCGCATAGGTTACAGgt-tgtgtaccttt------ttaattttctcatttttagaatatgcatg-agttcattttgtagctgtgccatctaggtttaatctcacaaattagggaaacctggaa---------------------------------------