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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCGTCACACCGCGGCGGAGCTTCTCGCTTACGCTAATCCTCAGAAGCTTAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataaatttttgtgtctaccaaatgttcgatgaaattcctgagtgaggaggtttttaacttttgttttggttttggatgtag

Basic information

species Arabidopsis thaliana
transcript AT1G72970.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164063039|gb|ES142368.1|ES142368
EST:     TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG                         GAACAAGGCCTCCGAGTAACAGGAGTAATATTCAAAGATGAGAAA
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTC-GAGTAACAGGAGTAATATTCAAAGATGAGAAA
EST: gi|163972843|gb|EL996650.1|EL996650
EST:     TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAG
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAG
EST: gi|125110429|gb|EL162393.1|EL162393
EST:     TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGA
genomic: TAGAGTCTTGATCTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGA
EST: gi|164122417|gb|ES105492.1|ES105492
EST:     TCGTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: TCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: gi|164096994|gb|EL977350.1|EL977350
EST:     GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TC-TTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: gi|163977229|gb|ES008105.1|ES008105
EST:     GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: gi|164167392|gb|ES202162.1|ES202162
EST:     AGAGTCTTGATCTACGCCACCGTGCCAAAAAATCGTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTACAAAGATGAGAAA
genomic: AGAGTCTTGATCTACGCCACCGTG-CAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATT-CAAAGATGAGAAA
EST: gi|124996360|gb|EL068629.1|EL068629
EST:     GTCTTGATCTACGCCACCGTGCAAAAAATCGTTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: GTCTTGATCTACGCCACCGTGCAAAAAATCG-TCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
EST: gi|124983174|gb|EL055924.1|EL055924
EST:     CTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTG                         GAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC
genomic: CTACGCCACCGTGCAAAAAATCGTCTTTGACACTTCTGgtactgataa ... ttggatgtagGAACAAGGCCTCGAGTAACAGGAGTAATATTCAAAGATGAGAAAGGTAATC