1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAGgtacttaaatcacacaagttcaggcatctgcccataatcatgttacagaacctattattgcctgtttacatagtttcttttactttcattccttgttggttcatgttatgaaataatatttctgatatgcagtgcataacaattcttcatgtgatatgctcattatagtgtggatattttactttatag
species | Arabidopsis thaliana |
transcript | AT1G72420.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGGCACCTATACTCTGATTCTGAATATGGAG GATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTEST: gi|116420282|gb|EG462874.1|EG462874
genomic: TGGCACCTATACTCTGATTCTGAATATGGAGgtacttaaat ... tactttatagGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATT
EST: AAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAG GATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATTEST: gi|86065274|gb|DR361031.1|DR361031
genomic: AAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAGgtacttaaat ... tactttatagGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATT
EST: AAAAGAT-ACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAG GATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCTATCAGATT
genomic: AAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAGgtacttaaat ... tactttatagGATTATCTTCGGCTTCGTTGGAAATTAAAGATGGAGGAAATCGATCAGATT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCGAAGAATGGGTACCCCCTGTAGAGAAGTGTATATTCAAGTTCAATTCAAAAGAAGACCTTAAGACATGGCACCTATACTCTGATTCTGAATATGGAGgtacttaaatcacacaagttcaggcatctgcccataatcatgttacagaacctattattgcctgtttacatagtttcttttactttcattccttgttggttcatgttatgaaataatatttctgatatgcagtgcataacaattcttcatgtgatatgctcattatagtgtggatattttactttatag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG