1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CAAGGGAAAGCACAGCATTGGGTGCCTTTTCTGGCTTCTGGCTCGCATGGTCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatatcattcttggagctcttagattagaaaggcatctgttcattaaaaactttccctgtttattgactgaatttttcatatggtatggtgttgtgcag
species | Arabidopsis thaliana |
transcript | AT1G72370.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCCTTCAGGTGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAEST: gi|116467170|gb|EG509762.1|EG509762
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|125162675|gb|EL189445.1|EL189445
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: AACCATTGCTGCTGGACAGAAGTGGGTATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAEST: gi|125314216|gb|EL328301.1|EL328301
genomic: AACCATTGCTGCTGGACAGAAGTGGG-ATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGA
EST: ACAGAAGTGGGTATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGAEST: gi|124915562|gb|EH989436.1|EH989436
genomic: ACAGAAGTGGG-ATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAAEST: gi|124840518|gb|EH924957.1|EH924957
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAA
EST: GCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|116470236|gb|EG512828.1|EG512828
genomic: GCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|124865338|gb|EH949775.1|EH949775
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: CTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|124861550|gb|EH945987.1|EH945987
genomic: CTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: TGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGEST: gi|125141967|gb|EL179468.1|EL179468
genomic: TGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAG
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGEST: gi|163996607|gb|ES050657.1|ES050657
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGG
EST: TGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|125233356|gb|EL247441.1|EL247441
genomic: TGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: GGAACCGATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGEST: gi|125069335|gb|EL135148.1|EL135148
genomic: GGAACC-ATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGG
EST: GATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|164188535|gb|EL992079.1|EL992079
genomic: GATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: AGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAAGAGGATGAEST: gi|164109033|gb|ES161256.1|ES161256
genomic: AGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCA-GAGGATGA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGEST: gi|125136668|gb|EL176698.1|EL176698
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAG
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAAEST: gi|125022124|gb|EL094393.1|EL094393
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAA
EST: AACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAEST: gi|125193660|gb|EL208614.1|EL208614
genomic: AACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAA
EST: AGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|47830956|gb|CK120640.1|CK120640
genomic: AGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|125312531|gb|EL326616.1|EL326616
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: CTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGAEST: gi|124930470|gb|EL007916.1|EL007916
genomic: CTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTEST: gi|164161625|gb|ES128643.1|ES128643
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACT
EST: TGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAAEST: gi|124815715|gb|EH900581.1|EH900581
genomic: TGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGGAGACTAAGCCAGAGGATGAA
EST: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATG GTTGACCTGTTCTTTTACAGGGAACCTGAGG
genomic: TCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatat ... tgttgtgcagGTTGACCTGTTCTTTTACAGGGAACCTGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAGGGAAAGCACAGCATTGGGTGCCTTTTCTGGCTTCTGGCTCGCATGGTCCTTCAGATGCGTGGAACCATTGCTGCTGGACAGAAGTGGGATGTCATGgtaagaatatcattcttggagctcttagattagaaaggcatctgttcattaaaaactttccctgtttattgactgaatttttcatatggtatggtgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT