Sequence
atgc intronic sequence ATGC exonic sequenceATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttctttacctacctcgttcaacatgaaaaccatgtagtgaaagtaatttgagttatctaagacggagacatagttagcatctgatctgaaaaaa...
Basic information
species | Arabidopsis thaliana |
transcript | AT1G71790.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G71790.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA20G31170.1 (Glycine max), 5'ss of exon 3
ATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttctttacctacctcgttcaacatgaaaaccatgtagtgaaagtaatttgagttatctaagacggagacatagttagcatctgatctgaaaaaa---------
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ATAAATACCATCCACCATTAGAAGATGGGTCCCTCCCTTCTTCAGAGTTGCGGAAGCTTGAAATTGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcctttatttacctcatctt---tagagcttttgtgctgt------ttttagatgtcttattaagaaacctttctccctattaacttattaactaatttctgt
upper sequence: AT1G71790.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA10G36400.1 (Glycine max), 5'ss of exon 3
ATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttctttacctacctcgt--tcaacatgaaaaccatgtagtgaaagta-atttgagttatctaagacggagacatagttagcatctgatctgaaaaaa
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ATAAATATCATCCACCATTAGAAGATGGGTCCCTCCCTTCTTCAGAGTTGCGGAAGCTTGAAATCGAAGCAAATGACATATTTGCAATATATCGTGACCAgtgaggtcctttacttacctcatctttagagcttatgtgtttttttagatgtctaattaagaaacctttctccctgat-taattattatttattacctaat--
upper sequence: AT1G71790.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ23979 (Selaginella moellendorffii), 5'ss of exon 3
ATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttctttacctacctcgttcaacatgaaaaccatgtagtgaaagtaatttgagttatctaagacggagacatagttagcatctgatctgaaaaaa
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ACAAATACGATCCTCCTCTCGAAGATGGAGCAATGCCCTCGGAGAAGCTCCGTGAGCTGGAAGTGGAAGCAAACGAAGTTTTTGCGATCTATCGTGACCAgtgag-----ttgatcgtgttttctttctggaaaagtggtcttccaaattctttctcgtag---------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|164204875|gb|ES165068.1|ES165068EST: CTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCG GTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGA
genomic: CTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttct ... tcttttccagGTATTATGAAGGTGGTATATCTTCAGTCTACATGTGGGAGGATGATAATGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ATAAGTATCTTCCTCCGCTAGAGGATGCTCTTTACCCATCTTCTGAATTAAGAAAGCTTGAAGTTGAAGCCAACGATATCTTTGCGATCTATCGTGACCAgtgaggttctttacctacctcgttcaacatgaaaaccatgtagtgaaagtaatttgagttatctaagacggagacatagttagcatctgatctgaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctacctcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaaacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaagtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgaaaaa