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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATTTCAGCAGCACAGGCTGGGAATTTGGATAACATGCAATCGTTCCACTATTCTgtgcgtttattaaacttgaaatattatttgactgttgtatatctgatgtattcaactctacaagcgagatgatttcttgggtatgactatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G71410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G71410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM2G061681_T02 (Zea mays), 5'ss of exon 3
TATTACTTCAGCTGGTTCTTGGAAGCTTGCCGGGTTTGGTTTTGCTATTTCAGCAGCACAGGCT---GGGAATTTGGATAACATGCAATCGTTCCACTATTCTgt----gcgtttattaaacttgaaatattatttgactgttgtatatctgatgtattcaactctacaagc-gagatgatttcttgggtatgactatgcag-
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---AACTTCTAACGGATCTTGGAAGCTTGGTGGGTTTGGTTTTGCTCTTTCAGTTGATCAAGCCACAGGTGGTTTGACTTCATCACAGCTATTCCATTATTCGgttagtaagtattctacatttagtttgtcattttggtggctttaatttgcagattcttttaccatattttgagaacattgactaatctgtattgtccctt