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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAGgtataatatgcaattctcatgttttttgccaagctatagatttaagcctaaacatattgaaaaccaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G70580.4
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G70580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: PP1S64_220V6.1 (Physcomitrella patens), 5'ss of exon 2
ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAGgtataatatgcaattc---tcatgttttttgccaagctatagatttaagccta-aacatattgaaaaccaatgcag--------------------------
||||| ||||| |||||||| ||||| |||||| | || ||||| || || |||||||||||||||||  | |     | ||    | ||| |||   ||    || ||||    | || ||  || ||||  | |   ||                           
ATTATCTTCACCAATGTTGGTAACCCACATGCTCTTGGTCAGAAGCCCCTCACTTTTCCTCGTCAGgtgaagtccttcactcgttccttgtctttcttcagctcattgatt--gccttacaatttagtgaagtctacatcaatcggtgaaatcgtaagagggatttgt

upper sequence: AT1G70580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ23041 (Selaginella moellendorffii), 5'ss of exon 2
ATTATTTTCACAAATGTTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAGgtataatatgcaattctcatgttttttgccaagctatagatttaagcctaaacatattgaaaaccaatgcag
|| || || ||||| ||||||||||| || ||| |||||||||| ||  |||| |||||||| ||||||  |    ||   ||   | || ||  | |  | |   |       |||                     
ATAATCTTTACAAACGTTGGAAACCCACACGCTCTAGGACAGAAGCCATTGACGTTTCCTCGCCAGgtactaggcacatgacttcaggttctt--ctaattttctttcgttttttaag--------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125054056|gb|EL124926.1|EL124926
EST:     ATGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG                         GTGGTTTCTTTATGCCAAAGCACCATTTCTGTTAGATGATCCA
genomic: TTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAGgtataatatg ... accaatgcagGTGGTTTCTTTATGCCAA-GCACCATTTCTGTTAGATGATCCA
EST: gi|125187911|gb|EL202865.1|EL202865
EST:     TTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAG                         GTGGTTTCTTTATGCCAAGCACCATTTCTGTTAGATGATCCAAATG
genomic: TTGGAAACCCTCATGCTTTAGGACAGAAACCTCTGACTTTTCCTCGTCAGgtataatatg ... accaatgcagGTGGTTTCTTTATGCCAAGCACCATTTCTGTTAGATGATCCAAATG