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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAGgttttagcttttctcaaatctctctctttttctctgttcatttacttattttcttctttgactaatacctaaaaaataggttaatacgaacaaaagagtg...

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125144430|gb|EL180100.1|EL180100
EST:     CTTGCCAAGACTTCAGACCCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
genomic: CTTGCCAAGAC-TCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
EST: gi|124902854|gb|EH976934.1|EH976934
EST:     CTTGCCAAGACTCAGA-CCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
genomic: CTTGCCAAGACTCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
EST: gi|125300682|gb|EL314767.1|EL314767
EST:     TTCAATCATCTTGCCAAGACTCAGACCCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCAATCTCACATCTT
genomic: TTCAATCATCTTGCCAAGACTCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCA-TCTCACATCTT
EST: gi|124744545|gb|EH835707.1|EH835707
EST:     TGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTT
genomic: TGAAGAATAGTACTTTGTTCAATCATCTTGCCAAGACTCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTT
EST: gi|125170769|gb|EL194058.1|EL194058
EST:     CTTGCCAAGACTCAGACCCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
genomic: CTTGCCAAGACTCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCATCTCACATCTTG
EST: gi|125026115|gb|EL098384.1|EL098384
EST:     GAAGAATAGTACTTTGTTCAATCATCTTGCCAAGAACTCAGACCCCAAAG                         TTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCA
genomic: GAAGAATAGTACTTTGTTCAATCATCTTGCCAAG-ACTCAGACCCCAAAGgttttagctt ... attatggcagTTTCTGGTGTTTGCTTGCTCTGATTCTCGAGTTTGTCCA