1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTGTGATTGATAATGACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttataattttggtttatgtctatatatcttgtttattcatttatgtagacttgtcctgaattttttgttttgtcttcttgatgttgtttag
species | Arabidopsis thaliana |
transcript | AT1G69040.2 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TAATGACTCTTGCAAGAAGGCAACTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTEST: gi|152038350|gb|BP814558.2|BP814558
genomic: TAATGACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: ACTCTTGCAAGAAGGCAACTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTEST: gi|152033851|gb|BP817681.2|BP817681
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: ACTCTTGCAAGAAGGCAACTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTEST: gi|152034011|gb|AU239517.2|AU239517
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: ACTCTTGCAAGAAGGCAACTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTEST: gi|152034315|gb|BP825151.2|BP825151
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: ACTCTTGAAAGAAGGCAACCTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTTEST: gi|152033946|gb|BP820708.2|BP820708
genomic: ACTCTTGCAAGAAGGCAA-CTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
EST: ACTCTTGCAAGAAGGCAACTGTGATAAGG GTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
genomic: ACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttat ... tgttgtttagGTGGATAGTGCAAATGAATATGGGATTCTTCTTGAAGTTGTACAAATCCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTGTGATTGATAATGACTCTTGCAAGAAGGCAACTGTGATAAGGgtacacttataattttggtttatgtctatatatcttgtttattcatttatgtagacttgtcctgaattttttgttttgtcttcttgatgttgtttag
- - - - - - - - - - - GCAAGA
- - - - - - - - - - - - AAGAAG