1 5' 3' | 2 5' 3' | 3 5' 3' |
TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAGgtattttttgtttgttctctcttgttttttaggttattggtaggtgagatttgtttatcaagaaaccaataaaaatcagtagcaagtcggtttcgtctaa...
species | Arabidopsis thaliana |
transcript | AT1G68490.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CAGAGACTGATATCTTAGATATCATACTCACCAAG GATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCCEST: gi|86051649|gb|DR347404.1|DR347404
genomic: CAGAGACTGATATCTTAGATATCATACTCACCAAGgtattttttg ... gtggttatagGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCC
EST: TTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAG GATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCCEST: gi|124943636|gb|EL019803.1|EL019803
genomic: TTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAGgtattttttg ... gtggttatagGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCC
EST: ATACTCACCAAG GATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCCEST: gi|86080128|gb|DR375885.1|DR375885
genomic: ATACTCACCAAGgtattttttg ... gtggttatagGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCC
EST: TTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAG GATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCC
genomic: TTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAGgtattttttg ... gtggttatagGATGGTTATGGTGCAGAACAAGTTAATAAGCAGGTAATAGACTCGCCGTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATCAATTGGAGCTTTGTGAATCCAAAGCAGAGACTGATATCTTAGATATCATACTCACCAAGgtattttttgtttgttctctcttgttttttaggttattggtaggtgagatttgtttatcaagaaaccaataaaaatcagtagcaagtcggtttcgtctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caagaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ataaaaa