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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAATCAAAAGATGGAATGAAGATCATTGCAACGGCATTTTTTGGAGTAACATTTGGCTTTCTGATTGGAATATCTTTTCCATCATTATCAATCACTAAGgttgccgaatcaatccttattgtcctatttctgtgtttgattagatttgtttccttatcatcattggaagatttttgttctcatatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G67850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67850.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0137g00770.t01 (Vitis vinifera), 5'ss of exon 3
GAAATCAAAAGATGGAATGAAGATCATTGCAACGGCATTTTTTGGAGTAACATTTGGCTTTCTGATTGGAATATCTTTTCCATCATTATCAATCACTAAGgttgccgaatcaatccttattgtcctatttctgtgtttgattagatttgtttccttatcatcattggaagatttttgttctcatatttcag-----------------------------------------------
 ||| |||| ||    |||| | | |||| |||    | | |||||||    ||||||||||| || ||||||||||||||| | || ||||| ||||||||  |     || |  |  | ||  | | | | |||||  |    | | | |  |  ||||  ||     | || | || || | ||  |                                                
AAAACCAAATGAGACTATGAGGCTTATTGTAACAATTTCTGTTGGAGTTGTTTTTGGCTTTCTAATAGGAATATCTTTTCCAACTTTGTCAATAACTAAGgt-acaattgcattgttcttagttttttgtttttgttttgtctcctctctgttatgttcatggttttgctaattattttatcttgttgtaatattgcttgagttattaaacttgtttcactatgtcaaattttggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|301502576|gb|HO208116.1|HO208116
EST:     CATTTGGCTTTCTGATTGGAATATCTTTTCCATCATTATCAATCACTAAG                         GTGAGTCTCCCTACAAACTTTCTTCCTTCAAACGATCTCTCATATATCGAG
genomic: CATTTGGCTTTCTGATTGGAATATCTTTTCCATCATTATCAATCACTAAGgttgccgaat ... catatttcagGTGAGTCTCCCTACAAACTTTCTTCCTTCAAACGATCTCTCATATATCGAG