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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGCTCCAACGATTAACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaagaagctaattttctatttttagtcatatgagaaatattcaacttaatctgaccaaaccaactttttgatttgatataatataaag

Basic information

species Arabidopsis thaliana
transcript AT1G67750.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116451985|gb|EG494577.1|EG494577
EST:     ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG                         GTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGG
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGG
EST: gi|125103450|gb|EL157853.1|EL157853
EST:     ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG                         GTGACTAAATACGAAGA
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGA
EST: gi|116436273|gb|EG478865.1|EG478865
EST:     ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAG                         GTGACTAAATACGAAGATGCCCCACGAAGCAAATGGAAGAAATGGAATTGG
genomic: ACAGTCAAGGCAATAGGTTTCTTGCTCCAAACGACCATGTCTTTAAAGAGgtaattaaga ... taatataaagGTGACTAAATACGAAGATGCACCACGAAGCAAATGGAAGAAATGGAATTGG