Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggctttctagctttagatgatgtggtgtggctctctgactcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag

Basic information

species Arabidopsis thaliana
transcript AT1G67580.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 3
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggcttt-ctagctttagatgatg-tggtgtggctctctgac-tcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag
|||||| | || ||||| || || |||||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||  |||   || | |||||||  |   | ||  |   ||| |  ||      ||||||   | |   |   | ||| |||||||| | | |||| | || |  |||| || || |||| | ||  | |  ||||| || ||||   | |  | || | |   | |  | ||     |    | |||| ||
ATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAgtaagtgcttacgatttcctttatttaaaaagt-tactgtttgattatattg-----tgcttatgttttgccactgttttctcaggcttttccaactttgggtggttctggtctgactatctggcctcccttggtgatttgtactgttga-acaaattttctatt-ttgtattaacaatggaatgttcctttcag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 6
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggcttt-ctagctttagatgatg-tggtgtggctctctgac-tcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag
|||||| | || ||||| || || |||||| | ||||||||||||||||| ||| ||||||||||||||||||| |||||||| || ||||||||  |||   || | |||||||  |   | ||  |   ||| |  ||      ||||||   | |   |   | |||||||||||| | | |||| | || |  |||| || || |||| | ||| | |  || || || ||||   | |  | || | |   | |  | ||  |  |    | |||| ||
ATTTTCCGGATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCCAAATTACCTGGAGTCAAGGTCAATTTTGTCAAACACCAgtaagtgcttacgatttcctttatttaaaaagt-tactgtttgattatattg-----tgcttatgttttgacactgttttcccaggcttttccaactttgggtggttctggtctgactatctggcctcacttggtgacttgtactgttga-acaaattttctatt-ttgtattaacaacggaatgttcctttcag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 3
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggctttctagctttagatgatgtggtgtggctctctgactcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag
||||||||||| ||||| || || |||||| | |||||||||||||||||  || ||||   |||||||||||| ||||||||| || |||||||||||||  || | |||||||     || ||  |     |  || |  |     ||||   | | | |   | |||||||                                                                                                           
ATTTTCAGAATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCCAAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtatttatgatttcctttatttaagaattttactgtttagttcccctgtt-----cttattttttatcactgttttcccag-----------------------------------------------------------------------------------------------------------

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 6
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatggaaggataaccttagtatatgcttaaagtctctaatattgttcccaggctttctagctttagatgatg-tggtgtggctctctgactcattagtggatttatattgttttcatagttgttatgtcactcttctcaccgcttacctgtacttttag
        ||| ||||| || || |||||| | |||||||||||||||||  || ||||  ||||||||||||| ||||||||| || |||||||||||||| || | |||||||     || ||  |     |  |  |  | |    ||   ||| ||  |    ||||||||||||| | || | | || |  |||| ||||| |||| |   |   |||  |||  |    |  |   ||  ||  | |   |  | |||    |    | |||| ||
--------AATTCTTGGCACACCAAATGAAACAATTTGGCCTGGGTTCTCAGAATTACCCTGAGTCAAGGTCAATTTTGTCAAGAATAAgtaagtatttataatttcctttatttaagaattttactgtttagttcctctgttcttatttttttgtcactgtt----ttcccaggctttc-aactctgggtggttctggtctggctatctggcctctct-tgg--ttacttctactcaactttttctagtttatattaattaccag--aatgttcctttcag

upper sequence: AT1G67580.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 3
ATTTTCAGAATCCTTGGTACTCCCAATGAATCTATTTGGCCTGGGTTCTCTAAACTACCTGGAGTCAAGGTCAACTTTGTCAAGCATCAgtaagtatttatagttccttttattttcagtttatatgg--aaggataaccttagtatatgcttaaagtctctaatattgttcccaggctttctagctttagatgatgtggtgtggctctctgactcattagtggatttatattgttttcatagttgttatgtcactctt---ctcaccgcttacctgtacttttag-
||||| |||| |||||| || || | |||  | |||||||||||||| || ||| | |||||||||||||| ||||| |||||||||||||||||||  ||    | | |   |     || |||| |  ||   |||| |     | | ||||   |  | | | || ||||||||||  | |||||| | ||||  ||| ||||| |||| |   |   |||  | | | | |   || ||    ||| ||    ||    | |||  | |  ||| | |||   
ATTTTTAGAACCCTTGGCACACCAAGTGAGACAATTTGGCCTGGGTTTTCCAAATTGCCTGGAGTCAAGGTTAACTTCGTCAAGCATCAgtaagtatccatttggcgtgtgtatgatgtttaatatagttaattgtaacatcctggtgttcttattcttgccactgtt-ttcccaggctc-ccagctttgggtgattcggtctggctttctggcc--tccatgg--tgacactttcagcacagcatatatttcttgtttgtattaaccattgatgtgttcctttcag