1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGATTGGATCTGCCCAAGTTGTGGCAATGTCAACTTTTCATTCAGGACAACTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttattttgtgttgcaatatcgaatatatgtctttctgctttgaaacagttttgtgtgcaaaacagtcattgacttcttggcgggtttagtagata...
species | Arabidopsis thaliana |
transcript | AT1G67325.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GACCTGCAGATCATAATGGA AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGEST: gi|116475625|gb|EG518217.1|EG518217
genomic: GACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
EST: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGEST: gi|116475626|gb|EG518218.1|EG518218
genomic: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
EST: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGGEST: gi|125081616|gb|EL142772.1|EL142772
genomic: CTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCCGGG
EST: TATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGA AAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCC
genomic: TATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttatt ... tctgtaacagAAGTCTGCTCCCAAACCTATGCAACATCAACAAGGTTTCTCATCACCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATTGGATCTGCCCAAGTTGTGGCAATGTCAACTTTTCATTCAGGACAACTTGCAATATGCGTAATTGCACTCAGCCTAGACCTGCAGATCATAATGGAgtaagttattttgtgttgcaatatcgaatatatgtctttctgctttgaaacagttttgtgtgcaaaacagtcattgacttcttggcgggtttagtagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaacag