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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATCgtaagctcttcttactcttgtgcctttgagttattgttttgtcttagattttagtttctatagtttttattctttcttgattttgatttttaag

Basic information

species Arabidopsis thaliana
transcript AT1G67320.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67320.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv05s0051g00930.t01 (Vitis vinifera), 5'ss of exon 3
AGACTTTGTGGAAAGAACATATGAGACTTTCGAATGTTTCAGAAATGATCAATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATCgtaagctcttcttactcttgtgcctttgagtt---attgttttgtctt--agattttag---tttctatagttttta----ttctttcttgattt--tgatttttaag------------------------
    | | ||||| | | ||||||| | | |  | |  || ||  |  |||| ||||||||||| || || ||||||||| | ||||||||||||||| |||||| | || ||  |||  |    |  |  |   ||| | | || ||   ||||| ||   ||  ||| || |||     || ||| || ||||    |||| |||                         
GCGATCTATGGAAGGCAAATATGAGGCATCCACAGGCATCTGAGTTTGTCAACAAGGATATAATTTCCCACTTTGTTCTTAGGCTCGTTTATTGTAGAACgtaagtttttgtttttctcattttctctatctcccattctctagtttttgggatttcaggcattcttatggtgtttgaaatttatttatttatttatcaatttctaaatatgatcttatcctggtgctttag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125201449|gb|EL216403.1|EL216403
EST:     TTCTTCGTCTCGCTTATTGTAGATC                         GGATGAATTGAAGAAATGGTTTCTTAGCATGGAAACCGCGCTTTTCCGCCA
genomic: TTCTTCGTCTCGTTTATTGTAGATCgtaagctctt ... gatttttaagGGATGAATTGAAGAAATGGTTTCTTAGCATGGAAACCGCGCTTTTCCGCCA
EST: gi|19875223|gb|AU236054.1|AU236054
EST:     AATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATC                         GGATGAATTGAAGAAATGGTTTCTTAGCATGGAAACCGCGCTTTTCCGCCA
genomic: AATAAGGATATAATCTCGCATTTTGTTCTTCGTCTCGTTTATTGTAGATCgtaagctctt ... gatttttaagGGATGAATTGAAGAAATGGTTTCTTAGCATGGAAACCGCGCTTTTCCGCCA