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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttcttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G65410.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: LOC_Os03g46740.2 (Oryza sativa), 5'ss of exon 4
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttcttctctatatgg---cagattacaacctttca---ggttatggattgtt--tctgatgattggtatgcag---------------------------
|||||||| || ||||| |||||  | ||||||||||| ||||| ||||| |||||  |||| ||| |||||||||| || || |||||||||||||| | |  |   |||||   ||| |      | |  | |  |||| |   ||||   | ||| |   ||||||  || | |                               
ATTAGACACGGAGAAGCCGTTGGAATAATTGGTCCTTCGGGAACAGGAAAGTCAACTGTTTTGAAGGTTATGGCTGGGCTACTGGCTCCAGACAAGgt-tatcgcatcttcttgattatctttattaaaacaataggcttttaggaggttcccgtttgatgtgctgatggctgttgtatttttattttaaatctgtgataatgagaag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G868168_T01 (Zea mays), 5'ss of exon 4
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttc---ttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag--------------------------------------------------
||||||||||||||||| |||||| | ||||| ||||| || || ||||||||||| || || ||| |||||||||| || |||||||| ||||||||     |   | |    ||  | || |  ||       | | ||||  | ||  ||| |   |     ||||||  | |                                                  
ATTAGACATGGTGAAGCAGTTGGGATAATTGGACCTTCAGGGACGGGAAAATCAACTATATTGAAGGTTATGGCTGGGCTGCTTGCTCCGGACAAGgttgtccatcttcttagtttgcccatgttacaacagtgcatcattcatttaatc-attttcattacaacttggtaaactggaagtttaatgtgctctttttcctttatctgtctctgcaataacaagcag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G889923_T01 (Zea mays), 5'ss of exon 1
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgttt---cttctctatatggcag-attacaacct---ttcaggttatggattgttt---ctgatgattggtatgcag-------------
 |||||||||||||||| |||||| | ||||| ||||| || || || |||||||| || || ||| |||||||||| || |||||||| ||||||||     |   | |    ||  | || |  ||  | | || | |   ||    |||    ||| |      || | ||  | |||               
GTTAGACATGGTGAAGCAGTTGGGATAATTGGACCTTCAGGGACGGGGAAATCAACTATATTGAAGGTTATGGCTGGGCTGCTTGCTCCGGACAAGgttgtccatcttcttagtttgcccatgttacaacagtgcatcattcattttcattacatcttggtcaactagaagtttaatgtgctctttttcctttatc

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G868168_T03 (Zea mays), 5'ss of exon 4
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttc---ttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag--------------------------------------------------
     |||||||||||| |||||| | ||||| ||||| || || ||||||||||| || || ||| |||||||||| || |||||||| ||||||||     |   | |    ||  | || |  ||       | | ||||  | ||  ||| |   |     ||||||  | |                                                  
-----ACATGGTGAAGCAGTTGGGATAATTGGACCTTCAGGGACGGGAAAATCAACTATATTGAAGGTTATGGCTGGGCTGCTTGCTCCGGACAAGgttgtccatcttcttagtttgcccatgttacaacagtgcatcattcatttaatc-attttcattacaacttggtaaactggaagtttaatgtgctctttttcctttatctgtctctgcaataacaagcag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GRMZM5G889923_T02 (Zea mays), 5'ss of exon 1
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttc---ttctctatatggcag-attacaacctt---tcaggttatggattgttt---ctgatgattggtatgcag----------------------------------
 |||||||||||||||| |||||| | ||||| ||||| || || || |||||||| || || ||| |||||||||| || |||||||| ||||||||     |   | |    ||  | || |  ||  | | || | ||   |    |||    ||| |      || | ||  | |||                                    
GTTAGACATGGTGAAGCAGTTGGGATAATTGGACCTTCAGGGACGGGGAAATCAACTATATTGAAGGTTATGGCTGGGCTGCTTGCTCCGGACAAGgttgtccatcttcttagtttgcccatgttacaacagtgcatcattcattttcattacatcttggtcaactagaagtttaatgtgctctttttcctttatctgtctctgcaataacaagcag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G38730.1 (Glycine max), 5'ss of exon 3
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttc---ttctctatatgg-----cagattacaacctttcaggttatggattgtttctgatgattggtatgcag----
|||||||||||||||||||||||  | |||||||||||||| || || ||||| ||| |||| |||||||| ||||| ||||||||||| ||||| ||   |  || |||    || |   ||||       |  ||  |||  || || | ||   |||  |   ||  ||| ||    |    
ATTAGACATGGTGAAGCTGTTGGAATAATTGGTCCTTCTGGGACCGGCAAATCTACAGTTTTGAAGATTATTGCTGGACTTCTTGCTCCGGACAAAgtacctatctatttagaattttgagtatgtacttttaatttcaaacagttgagttcatttcttgaatgctattgttgttaaattgacag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA18G47600.1 (Glycine max), 5'ss of exon 3
-ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGg------tctgttactgtttct---tctctatatggcagattaca-----acctttcaggttatggattgtttc--tgatgattggtatgcag------
 || |  |||||||||||||||||  | |||||||| ||||| ||||| ||||| ||| |||| |||||||| || || ||||||||||| |||||||      | ||      | | |   | ||| |  ||  | || ||     |   || ||  ||      ||||   | ||| |||||   |        
GATCAAGCATGGTGAAGCTGTTGGAATAATTGGTCCCTCTGGGACTGGCAAATCTACAGTTTTGAAGATTATTGCAGGACTTCTTGCTCCGGACAAggtaaacatatgagggcatgtttggatttctgttgggatggtttcaaaagtatgcttgagagtaaaatcagtttgggttatgtttggttaccccctaaaa

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv04s0023g00290.t01 (Vitis vinifera), 5'ss of exon 3
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttcttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag-------------------------------------
||||||||||| |||||||||||| | ||||| |||||||| ||||| ||||||||| || | |||||||| || || ||||||||||||||||||||     |     | | || | |||    | ||   |    ||   |  | ||||   |  | |   || | ||                                        
ATTAGACATGGGGAAGCTGTTGGGATTATTGGGCCTTCTGGCACTGGGAAATCAACAGTTCTGAAGATTATTGCGGGACTTCTTGCTCCAGACAAGgtaaacaatctgatatgctttttatactggctttgtaatgatcttatctttgattagcttagttatatgctctgtcattaagattctcttatggagattgtatctgtggggcag

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ30431 (Selaginella moellendorffii), 5'ss of exon 2
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttcttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag
 |  | |||||||| ||||| ||  | ||||| ||||||||||| ||||| || || ||||| |||||||||||||| ||||||| ||| ||||||||   | |    || || |   |||  | |||||    ||| |    | |   |                       
GTCCGCCATGGTGAGGCTGTGGGAATTATTGGACCTTCTGGAACAGGAAAGTCCACGATTTTGAAGATTATGGCTGGACTTCTTGTTCCTGACAAGgtt--tcatccgttttttttggtatttctgatta-gctcttcctcaatgttcttcag--------------------

upper sequence: AT1G65410.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: EFJ22908 (Selaginella moellendorffii), 5'ss of exon 2
ATTAGACATGGTGAAGCTGTTGGGGTGATTGGTCCTTCTGGAACTGGAAAATCAACAATTTTAAAGATTATGGCTGGTCTTCTTGCTCCAGACAAGgtctgttactgtttcttctctatatggcagattacaacctttcaggttatggattgtttctgatgattggtatgcag
 |  | |||||||| ||||| ||  | ||||| ||||||||||| ||||| || || ||||| |||||||||||||| ||||||| ||| |||||||| |  | | |||| || | | | | |   ||| |    || |   |  | |||  | |                  
GTCCGCCATGGTGAGGCTGTGGGAATTATTGGACCTTCTGGAACAGGAAAGTCCACGATTTTGAAGATTATGGCTGGACTTCTTGTTCCTGACAAGgtttcat-ccgtttttttttttttttgt--atttctgatttgctcttcctcgatgttcttcag--------------