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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGCAAAACATCTTGGACAAAATCTGTAAGACGTTCTATCTCCCGGCTTGGTGCTCCACCGATGATTATGTCAACTTGCTTCAATCCCATTCTCTCCAGgttattatattccctaccctttgctgccgaaaacattacttaactagagtttttttactaaactagaatctgaaatatgtgtttttag

Basic information

species Arabidopsis thaliana
transcript AT1G64970.1
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079138|gb|DR374895.1|DR374895
EST:     GGTGCTCCACCGATGATTATGTCAACTTGCTTCAATCCCATTCTCTCCAG                         GATATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGC-TGCG
genomic: GGTGCTCCACCGATGATTATGTCAACTTGCTTCAATCCCATTCTCTCCAGgttattatat ... gtgtttttagGATATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCG
EST: gi|125067523|gb|EL133999.1|EL133999
EST:     TCCCATTCTCTCCAG                         GATATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCG
genomic: TCCCATTCTCTCCAGgttattatat ... gtgtttttagGATATTAAGTGTGCGGATTGGTCAGAGAACGTAGCTCCTTTCTGGCCTGCG