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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGGCAAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATCTTTTCCATTgtaagttcttgaacttattgttgtaacttactttatctaatacactcttcttctctatggttatgattctgtagtaactgttgttttgtttttttag

Basic information

species Arabidopsis thaliana
transcript AT1G63500.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA08G01730.2 (Glycine max), 5'ss of exon 4
AGAATGGCAAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATCTTTTCCATTgtaagttcttgaacttattgttgtaacttactttatc--taatacactcttcttctctatggttatgattctgtagtaactgttgttttgtttttttag----
||| ||  |||||| ||||||||||||| |||||||||||| ||  | |||||||| || | |||||| ||||| |||||||| |||||| | ||||||||||||| | | |||| |   ||  || | | |||  |   | ||   |   | | |   || || |  || |  |  ||    |  | |      | |     
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGGCAAAGCATTTATTCCATTgtaagtgcat-aactgacaatt--aattcagtttgccagcattagctttgccatttacttgtttgtatttttaaatcaaactcttatctaaccagtgactgag

upper sequence: AT1G63500.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA05G37870.1 (Glycine max), 5'ss of exon 5
AGAATGGCAAATCTTCTTGGATGTTGTTATGAAGGTGAAGAGAGACTTCTTGTTGCTGAGTTTATGCCTAATGAAACTTTGGCTAAGCATCTTTTCCATTgtaagttcttgaacttattgttgtaacttactttatcta-atacactcttcttctctatggttatgattctgtagta-actgttgttttgttt---ttttag-
||| ||  |||||| ||||||||||||| |||||||||||| ||  | |||||||| || | |||||| ||||| |||||| | |||||| | ||||||||||||| | | ||||     ||  || | | |||  ||  ||   || |     |   | |||  | ||||     | ||| || |  ||       | | | 
AGATTGATAAATCTGCTTGGATGTTGTTGTGAAGGTGAAGAAAGGTTACTTGTTGCAGAATATATGCCCAATGATACTTTGACAAAGCATTTATTCCATTgtaagtgcat-aactagcaatt--aattcagtttgcctgcattagctttggcatttacttgtttgggttctaggtcagactcttatcctgaacacaatctggt