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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgtttttaaaactctatcatcccttttcaaaactatgagtgtgaattttatctatatcgtgttccatggagagaacagagataatattgaaaatgct...

Basic information

species Arabidopsis thaliana
transcript AT1G62850.3
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62850.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA17G14410.1 (Glycine max), 5'ss of exon 3
TGAATACCAAAGTAGATATGCGCTTCAATGTTAAGAACGCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgtttttaaa-actctatcatccctttt-----caaaactatgagtgtgaat-tttatctatatcgtgttccatggagagaacagagataatattgaaaatgct
|||| ||||| || || ||||||||||||||||| || || |||||| ||||||||||||||||||| || || || |  ||||| |||    |   || | |  |  | | |       ||||  |||    | | | ||||  ||   | |      |  |   | ||| |   || |||        
TGAACACCAAGGTGGACATGCGCTTCAATGTTAAAAATGCATATTGGTTGAGTGACAGGATCAGAGACAAGATTTTGCAAACGgtatgtcacaactcaccccactaatcttctctgccgtaaaatcatgtcattaactgtttacataagccttaaatgttatatgaagcagtgcacattttgc-------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125171148|gb|EL194200.1|EL194200
EST:     AACGTCGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACG                         GAGAAGAATCGGATCAACAAGGAATGGTGAACTTGTGATATCTTCTACCAA
genomic: AACG-CGTATTGGCTGAGTGACAGGATCAGAGAGAAAATCTTACTGACGgtttgttttt ... ttgtcaacagGAGAAGAATCGGATCAACAAGGA-TGGTGAACTTGTGATATCTTCTACCAA