Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAACTAAGACAGTGTGTAGGTCTTGTTGAATTGTCGTTGGAACACAATAAACTTGTCCGGCCTCTTCTTGATTTCAGgtcattggggcagagagctggtattactgttttaatttcttcttgaagttagttaggatgctgattaagtatacgattgaaatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G61850.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G61850.2 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv10s0116g00830.t01 (Vitis vinifera), 5'ss of exon 3
TGGAACTAAGACAGTGTGTAGGTCTTGTTGAATTGTCGTTGGAACACAATAAACTTGTCCGGCCTCTTCTTGATTTCAGgtcattggggcagagagctg---gtattactgttttaatttcttcttgaa-gttagttaggatgctga---ttaagtatacgattgaaatgcag------------------------
| ||||| ||||| ||||| |  || || ||| ||||  |||| ||||| ||||||||||| |||||||||||||||||||||||    |||  | | |    | |||   |||  | || |  || ||    | || ||||  ||    ||  | |     |    ||  |                         
TAGAACTGAGACAATGTGTTGAACTGGTGGAACTGTCACTGGAGCACAACAAACTTGTCCGCCCTCTTCTTGATTTCAGgtcatttcatcagcaatcagcatattttatgctttccacttatgtttcaataaaaattgggattttggaggttttgaacttcttctggatctaatgtttctctccagttgaatggcag