Sequence
atgc intronic sequence ATGC exonic sequenceAGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgcttcttcatatcttgtgtggagagtagtcattcacttttctgatgtaataaagaagcaaaatctgattcttctttgaacccatgcttgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G61150.3 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G61150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA13G31720.1 (Glycine max), 5'ss of exon 3
AGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgcttctt-catatcttgtgtggagagtagtcattcacttttctgatgta-ataaagaagcaaaatctgattcttctttgaacccatgc-ttgcag
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AGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAAGCAGTACAAAGTGGTAATGTTGAGGATGCAATTGAAAAAGTGAATGACTTAAATCCGGAGgtaggcttccttttatttatttattttgtgatgtgataacttcccatttctatgcatatttatttttagtgtacaataacacgt--aatgcatgcattattc
upper sequence: AT1G61150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G07570.3 (Glycine max), 5'ss of exon 4
AGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgcttctt-catatcttgtgtggagagtagtcattcacttttctgatgtaataaagaagcaaaatctgattcttctttgaacccatgcttgcag---
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AGATCTTGCAACAATAACAGATCGCATGGCTGTTAAAAAGGCAGTACAAAGTGGTAACGTTGAAGATGCAATTGAAAAAGTGAATGACTTAAATCCAGAGgtaggcttctttttatttatttattttgtgatgtgataacttcccatttctgtgcatcttattctccg---tttatttttagtgtacataatgcatgcattat
upper sequence: AT1G61150.3 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv10s0116g00670.t01 (Vitis vinifera), 5'ss of exon 7
AGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgcttcttcat-atcttgtgtggagagtagtcattcacttttctgatgtaataaagaa-gcaaaatctgatt-cttctttgaacccatgcttgcag
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AGATCTTGCAACAATAACAGATCGCATGGCTGTTAAGAAGGCAGTACAGTGTGGGAATGTTGAGGATGCAATTGAGAAAGTAAATGATTTGAATCCTGAGgtatgttgctctatgatcatcttcacaagggagtatttttgtattgatagttttgaatgtgaaatgttaaatatgattgcttcatcctttacattatcgc--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125125022|gb|EL170665.1|EL170665EST: TTGAAAAAGTTAATGATTTGAATCCTGAG ATACTAGACACGAATCCGGAGCTCTTTTT-CATCTTCAGCAGCAAAGGTTG
genomic: TTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgct ... atgcttgcagATACTAGACACGAATCCGGAGCTCTTTTTTCATCTTCAGCAGCAAAGGTTG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AGATCTTGCGACCATTACTGATCGAATGGCTGTTAAAAAGGCTGTTCAAAACGGAAATGTCGAGGATGCGATTGAAAAAGTTAATGATTTGAATCCTGAGgtacaatgcttcttcatatcttgtgtggagagtagtcattcacttttctgatgtaataaagaagcaaaatctgattcttctttgaacccatgcttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG