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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGATCTCCATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGGGACTCTTTGATGCAGTGACCCTTCTCCTTAGgtttgtctaatcatagcttcaaatttttgttatattatttctacattcccaacttcgctcaaattttcgatcttcctctcttctgaacccaaattacag

Basic information

species Arabidopsis thaliana
transcript AT1G60970.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA15G13190.3 (Glycine max), 5'ss of exon 3
AAGATCTCCATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGGGACTCTTTGATGCAGTGACCCTTCTCCTTAGgtttgtctaatcatagcttcaaatttttgttatattatttctacattcccaacttcgctcaa--attttcgatcttcctctcttctgaacccaaattacag------------
||||||| || ||||||||||| || |||||  | ||||| ||||||||||||||||  || ||  ||| | | |||||| | |||  |||||| || |||||    ||||| ||  || | | |||   ||| ||   | | ||        |||  || |  | | |  |        || |          | | |              
AAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttg---taatcttatattaacaatttatctatgtttcgtgttcaagggtgttttcaatctatcactattaacacagtagtccttgatgattttactgccttttcccctccag

upper sequence: AT1G60970.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: GLYMA09G02270.3 (Glycine max), 5'ss of exon 3
AAGATCTCCATTTCTTTGTTACGGGCGGTGAAGAGGAAAACGAGCTTATCTTAGCCAGTGTGCTTGAGGGACTCTTTGATGCAGTGACCCTTCTCCTTAGgtt--tgtctaatcatagc--ttcaaatttttgttatatt-------atttcta---cattcccaacttcgctcaaattttcgatcttcctctcttctgaacccaaattacag
||||||| || ||||||||||| || |||||  | ||||| ||||||||||||||||  || ||  ||| | | |||||| | |||  |||||| || |||||   |||| |    | |  || | || | |   || ||        ||| ||    ||  | |    | |   | |  | |||  |  |    |||   |||   |     
AAGATCTTCACTTCTTTGTTACCGGTGGTGATTATGAAAATGAGCTTATCTTAGCCACAGTTCTGCAGGCATTTTTTGATTCTGTGGGCCTTCTGCTCAGgttgtggtcttacataaacaatttatatatgttccatgttcaagggtgtttttaatctatcactattaacacagtagtccttgatgattttactgtcttttcccctctag---