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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAgtaaacaaaaactctctgaccttattgcttcttttatggtacctctctcctttttctgcttatcgaaaagtttatgctcatatcag

Basic information

species Arabidopsis thaliana
transcript AT1G60490.1
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G60490.1 (Arabidopsis thaliana), 5'ss of exon 3
lower sequence: Vv01s0127g00430.t01 (Vitis vinifera), 5'ss of exon 3
ATTGAAAACTACAGGACCACCATACTGCTGGAACGAACTCATCACTCTCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAgtaaacaaaaactctctgaccttattgcttct-tttatggtacctctctcctttttctgcttatcgaaaagtttatgctcatatcag----------------
 ||| || ||||||||||| |||| |||||||| |||||||| ||| | ||| | ||||| || ||| | ||||| || |||||||||||  | |||||||      |    |      |  ||||| | ||| |||| |  ||     |  || |   ||   |   ||| |  |    | |                 
GTTGGAATCTACAGGACCATCATATTGCTGGAATGAACTCATTACTTTGAGTACAAAATATCGCGACCTAACTGCTCACTCACAACTTGCATTAACAgtaagttggcagcagcaatttcttatgcttatctttttggtccaccttcaggtcatcag---atttgagcatttttctttgggtgaaaaactgatagatttac
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116469040|gb|EG511632.1|EG511632
EST:     TCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACA                         GTATGGGATGTTTCGTGTGGCAAAACTGAGGGACTGATTGGTGGGGCAACA
genomic: TCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAgtaaacaaaa ... ctcatatcagGTATGGGATGTTTCGTGTGGCAAAACTGAGGGACTGATTGGTGGGGCAACA
EST: gi|86068050|gb|DR363807.1|DR363807
EST:     TCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACA                         GTATGGGATGTTTCGTGTGGCAAAACTGAGGGACTGATTGGTGGGGCAACA
genomic: TCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAgtaaacaaaa ... ctcatatcagGTATGGGATGTTTCGTGTGGCAAAACTGAGGGACTGATTGGTGGGGCAACA
EST: gi|164153334|gb|ES105021.1|ES105021
EST:     TCAGTTCTAAATATCGGGACTTGACTGCCCATTCACAACTTGCGATTACA                         GTATGGGATGTTTCGTGTGGTAAAACTGAGGGAC
genomic: TCAGTTCTAAATACCGGGACTTGACTGCCCATTCACAACTTGCGATTACAgtaaacaaaa ... ctcatatcagGTATGGGATGTTTCGTGTGGCAAAACTGAGGGAC